PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00428g01010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 253aa    MW: 28832 Da    PI: 4.8838
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00428g01010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.1e-099381848
                              HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +l +g W+ Ia  ++ gRt++++k++w++yl
  Niben101Scf00428g01010.1  9 KLRKGLWAQIATQLP-GRTDNEIKNFWNSYL 38
                              677888*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.478142IPR017930Myb domain
CDDcd001673.49E-6838No hitNo description
PfamPF002492.0E-7838IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-13955IPR009057Homeodomain-like
SuperFamilySSF466893.9E-81349IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRHSFKEKL RKGLWAQIAT QLPGRTDNEI KNFWNSYLKK KLIKQGIDPN THKPLSENQV  60
RNETDCTDKA SMLLIPQLPN MSISANMEQP FHLSEASVDC EANRQLTEAS RNQLVSKQVC  120
DPLFLFDIQA NVDPSEYNSE LLGQSQQNLR PYDHQNQIEG NPNFGFCSML KNDEAKQSSS  180
NSANMNNHHN AAEIQMDDML GNPQDLTWDS ENKIDSLFQY PYGGIKNEED FRNNPLSSLS  240
EDTCGENLVF HHI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773279.11e-149PREDICTED: myb-related protein 330-like isoform X1
TrEMBLA0A1U7WF531e-147A0A1U7WF53_NICSY; myb-related protein 330-like isoform X1
STRINGXP_009773279.11e-148(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-18myb domain protein 86