PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00417g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 347aa    MW: 39908.2 Da    PI: 5.5382
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00417g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix674e-2125972586
                  trihelix 25 k..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86
                              k          +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++  +++ ++
  Niben101Scf00417g00005.1 25 KkkcggnvgvlQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQNLLETMD 97
                              234455666669*********************************************559*******999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.6E-1732123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVVYYIGDEV GSEVNNNNND TNNGKKKCGG NVGVLQKKGK WKSVSRAMME RGFYVSPQQC  60
EDKFNDLNKR YKRVNDILGK GTACRVVENQ NLLETMDHLT QKMKEEVKKL LNSKHLFFRE  120
MCAYHNSCGH NNTSTGGGSG NVQPSTDMAV EANSQAQRRC LHSSENARIE VHLEEGTNMA  180
KGKSVDDDQE NNEEDEDEDE EEDDDDELSG ARGGHDNQHS HEYDDDMDER SRKRQRKSGS  240
LSPMVQQLSS ELANVIQDGG RSSIEKRQWL KTRILQLEEQ HVGYLCQAFE LQKQRMKWEK  300
FTSKKEREME KEKLINERKK LENERMVLLL RQKEFELLDF ASAASES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788508.10.0PREDICTED: ESF1 homolog
TrEMBLA0A1U7XCB60.0A0A1U7XCB6_NICSY; ESF1 homolog
STRINGXP_009788508.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.15e-54sequence-specific DNA binding transcription factors