PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00393g02001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 366aa MW: 40570.7 Da PI: 9.4853

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00393g02001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.9	1.4e-15	296	339	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lk + Niben101Scf00393g02001.1 296 RRQKRMIKNRESAARSRARKQAYTHELENKVSRLEEENERLKRR 339 79***************************************943 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00041	5.7E-6	183	198	IPR001630	cAMP response element binding (CREB) protein
Gene3D	G3DSA:1.20.5.170	1.4E-15	286	339	No hit	No description
PRINTS	PR00041	5.7E-6	291	307	IPR001630	cAMP response element binding (CREB) protein
SMART	SM00338	3.7E-13	292	360	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.565	294	339	IPR004827	Basic-leucine zipper domain
CDD	cd14707	8.83E-23	296	341	No hit	No description
Pfam	PF00170	1.4E-12	296	339	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.56E-10	296	341	No hit	No description
PROSITE pattern	PS00036	0	299	314	IPR004827	Basic-leucine zipper domain
PRINTS	PR00041	5.7E-6	309	329	IPR001630	cAMP response element binding (CREB) protein
PRINTS	PR00041	5.7E-6	329	346	IPR001630	cAMP response element binding (CREB) protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MGSQGGGSTS MGATQAQDPK PNALARQGSL YSLTLDEVQN QLGDLGKPLS SMNLDELLKT 60 VWTVEASQGM GGTDYGALQH SQVASGSSLH RQSSITLTGD LCKKTVDQVW QDIQQGQKRD 120 NSDRKTQERQ RTLGEMTLED FLVKAGVDIQ QGQKRDNSDR KTQERQRTLG EMTLEDFLVK 180 AGVVAEPTPG KRSSSGSGLG ADSMALPQQQ AQWSHYAIPQ IPPQQPQQQN MLPVFMPGHP 240 VQQPLAVVAD PIMDAAYPES QMTMSPTALL GTLSDTQTLG RKRVAPEDMV EKTVERRQKR 300 MIKNRESAAR SRARKQAYTH ELENKVSRLE EENERLKRRK EIEKVLPSVP PPEPKYQLRR 360 TSSAPF

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MGSQGGGSTS MGATQAQDPK PNALARQGSL YSLTLDEVQN QLGDLGKPLS SMNLDELLKT  60
VWTVEASQGM GGTDYGALQH SQVASGSSLH RQSSITLTGD LCKKTVDQVW QDIQQGQKRD  120
NSDRKTQERQ RTLGEMTLED FLVKAGVDIQ QGQKRDNSDR KTQERQRTLG EMTLEDFLVK  180
AGVVAEPTPG KRSSSGSGLG ADSMALPQQQ AQWSHYAIPQ IPPQQPQQQN MLPVFMPGHP  240
VQQPLAVVAD PIMDAAYPES QMTMSPTALL GTLSDTQTLG RKRVAPEDMV EKTVERRQKR  300
MIKNRESAAR SRARKQAYTH ELENKVSRLE EENERLKRRK EIEKVLPSVP PPEPKYQLRR  360
TSSAPF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016492897.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	7e-90	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A1S4BVI8	0.0	A0A1S4BVI8_TOBAC; ABSCISIC ACID-INSENSITIVE 5-like protein 2
STRING	XP_009614068.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3334	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-76	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]