PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00389g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 724aa    MW: 80593.9 Da    PI: 8.5035
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00389g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-07615664147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
  Niben101Scf00389g00004.1 615 RRPFSVAEVEALVEAVEQLGTGRWRDVKMRAFdnaDHRTYVDLKDKWKTL 664
                               6789999*******************97666689*9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.39E-7417495IPR029071Ubiquitin-related domain
PROSITE profilePS5005310.049421491IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.908.1E-4424491No hitNo description
PROSITE profilePS5129416.721610669IPR017930Myb domain
SMARTSM007179.1E-8614667IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-10615665IPR009057Homeodomain-like
CDDcd116604.23E-17616666No hitNo description
SuperFamilySSF466898.97E-16616697IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MVSKKRLNCG FSGYQIPVIP KAPRSARVSV LYLLNYAFTT FSLPFLNVSC NSNFFQKRRP  60
CNKLDDDQIC AFELLAAVAG KLLLESESSA SSNAGAPAGK YELADCRDSI KHEQVEDDKA  120
VRSECLDQGS CIESAYKPEA AELEQTFKNG LSKPFTENKS FLEHTSTIIG SNSLLKDWSD  180
VKLESCKEVS ADAQLQTKVE GGSPDLADPF DIRIAEGTRK QLNDDSKQTE LTVANSCSIK  240
APIEKNVNNS VLVNSDSSVQ LPLYRDPIPC ASFVKSRNNV KLGIRDDDED YFGCYRHSTK  300
IRTFRPTSRI TYRRIKKMLT SRHWKVAPKL KDCERSYSND GVKSFYCNRK SKHGNERCRF  360
EIPSKRRKLY DHGFAVAYDQ EASSKSISNS HEKGIKGDNA VPPKGAGASA SVRNHQKDPN  420
VKFSIKSFKV PELYIEVPET ETIGSLKRTV MEAVTAILGS GLRVGVVLQG KKVRDDNRTL  480
QQAGISPNDN LDTLGFTLVP SFSKVPLSLS PNDDTLASAS YITDQELSRH PSSPIFKLGP  540
PNALSDPPEA KLDKHDESNH ELEMSPTTPI DQSADEAFPD FRALAIVPPV NTEALAVVPV  600
NHKNRHSELS QRRTRRPFSV AEVEALVEAV EQLGTGRWRD VKMRAFDNAD HRTYVDLKDK  660
WKTLVHTASI APQQRRGEPV PQELLDRVLA AHSYWSKHQA KQHAKQHAEP LKIVDAQVQN  720
DVTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-655997201118Telomere binding protein TBP1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238740.10.0PREDICTED: telomere repeat-binding protein 4-like
TrEMBLA0A1J6KI460.0A0A1J6KI46_NICAT; Telomere repeat-binding protein 3
STRINGXP_009785792.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-98TRF-like 2