PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00388g08016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 329aa    MW: 37305.8 Da    PI: 7.0486
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00388g08016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-171462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd++l+ +++q+G+g +W t ++++g++R++k+c++rw++yl
  Niben101Scf00388g08016.1 14 RGPWSPEEDDKLKFYIQQHGTGgNWITLPQKVGLKRCGKSCRLRWLNYL 62
                              89*********************************************97 PP
2Myb_DNA-binding39.41.4e-1269111246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g +T+eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Niben101Scf00388g08016.1  69 GEFTEEEDNIICSLYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                               78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.813962IPR017930Myb domain
SuperFamilySSF466892.21E-2711109IPR009057Homeodomain-like
SMARTSM007172.3E-111364IPR001005SANT/Myb domain
PfamPF002492.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241569IPR009057Homeodomain-like
CDDcd001679.06E-91662No hitNo description
PROSITE profilePS5129422.19563117IPR017930Myb domain
SMARTSM007171.1E-1167115IPR001005SANT/Myb domain
PfamPF002493.0E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2470117IPR009057Homeodomain-like
CDDcd001674.66E-870111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDDKLKFYIQ QHGTGGNWIT LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTEEEDNIIC SLYLSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK  120
QRKDHRPRTG YHHNNKLEMT KQNENFFATP DNNAYYSWSP QPLVFSTLIA PQSDLAESST  180
NIHNFQYSLD QVYFCQDQLC QSSTNQLASI NPLNINTCDS SVTNSYYPGI INGVSNNSFQ  240
EYSNNYVPVG LADNVLNSTS SLSQQMDKSV LEMVNSSTIS TTSPDISTSW EELSPLIVYP  300
PSVSNSETQL EISPCYVLEE SRYLGLLKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016467129.10.0PREDICTED: transcription factor RAX3-like
TrEMBLA0A1S3ZS060.0A0A1S3ZS06_TOBAC; transcription factor RAX3-like
STRINGXP_009630071.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-74myb domain protein 84