PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00388g03006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 420aa    MW: 47460.9 Da    PI: 7.0922
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00388g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.82e-11310366155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+ ++ a++k++g
  Niben101Scf00388g03006.1 310 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARSYDLAALKYWG 366
                               78*******************87776664446655.77******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-13310376IPR016177DNA-binding domain
CDDcd000189.44E-19310374No hitNo description
PfamPF008471.1E-8310366IPR001471AP2/ERF domain
SMARTSM003807.5E-20311380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-12311375IPR001471AP2/ERF domain
PROSITE profilePS5103217.042311374IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MKSLSNDENS TNTNTNSHWL GFSLSPHINN LEGPSPDHHH TQPGSSNVPN SVSIRFSPTH  60
LNYPGIYNNT EGDNASFFSS YSVMPLKSDG SLCIMKAFNR SQQPQGMVSS TPKLEDFIGT  120
HHYEDCNRGG MTHSLDNNIY YNQHQENETS NSQDFLNHFQ DNSRQQQHYA DFSAFRGHEL  180
YHSIEQGKTD CNHQVPTLPV DEMSGINNWV SRNYQNPTGH ALEQNMIGCM ADNSGESGSS  240
GAMTYGDFKS LSLSMSPDSQ SSCVTGTQQI SPNVAECIAM ETRKRGPEKV ENQKQIVHRK  300
SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQSR KGRQGGYDME EKAARSYDLA  360
ALKYWGASTH INFPLENYLQ ELEEMKNMTR QEYVANLRRK SSGFSRGASM YRGVTRFGTH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769995.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2
RefseqXP_009769996.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X3
RefseqXP_016466578.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A1S3ZQP70.0A0A1S3ZQP7_TOBAC; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A1U7VYF50.0A0A1U7VYF5_NICSY; AP2-like ethylene-responsive transcription factor ANT isoform X3
TrEMBLA0A1U7W6X10.0A0A1U7W6X1_NICSY; AP2-like ethylene-responsive transcription factor ANT isoform X2
STRINGXP_009769992.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20742460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.16e-74AP2 family protein