PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00381g03004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 310aa    MW: 35710.6 Da    PI: 9.7905
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00381g03004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.8e-12145189347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+ E+ l++ + +++G+g+Wk+I+r+    +t+ q+ s+ qky
  Niben101Scf00381g03004.1 145 PWTEGEHRLFLMGLNRFGKGDWKSISRYYVVSKTPTQVASHAQKY 189
                               7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.720.107.8E-522137IPR017849Alkaline phosphatase-like, alpha/beta/alpha
PROSITE profilePS512937.2843187IPR017884SANT domain
SMARTSM007170.183285IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-63487IPR009057Homeodomain-like
PROSITE profilePS5129415.302137194IPR017930Myb domain
SuperFamilySSF466893.81E-15139193IPR009057Homeodomain-like
SMARTSM007174.8E-8142192IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.4E-16143192IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.9E-8145189IPR009057Homeodomain-like
CDDcd001674.46E-8145190No hitNo description
PfamPF002498.6E-10145189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEWPEFLERS NSKEFTFGLF SATPQNNEVV VRPDQWTPEE KRIFENALSV FNNPISPPFF  60
DYVASKLPHK PLEEIKKYYL ALFKDVEMEN PENKAPATDG YALEHDQQNN YQVPQEDDHS  120
DMEAAQNGTP PPVENNRPRR RRGIPWTEGE HRLFLMGLNR FGKGDWKSIS RYYVVSKTPT  180
QVASHAQKYF GRRNSATPPE RRRPSINDIQ TVTLNPRATT VTGQINNGRL TYNNNNQGPS  240
LPMHYPYNFG GAMFGHNSHG NFGNFINRGQ SSFNMQQNNN NNNNNLRRPV SPRPFLSMYL  300
SSATRNNNRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019239824.10.0PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A1J6J9250.0A0A1J6J925_NICAT; Transcription factor myb1r1
STRINGXP_009784767.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52342032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-33MYB family protein