PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00369g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 430aa MW: 48091.6 Da PI: 8.6656

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00369g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Niben101Scf00369g00001.1 73 FICEVCNKGFQREQNLQLHRRGH 95 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.74E-8	72	95	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.5E-6	72	95	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	2.0E-5	73	95	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0052	73	95	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.99	73	95	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2
SMART	SM00355	88	116	146	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.7E-5	139	172	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.74E-8	146	171	No hit	No description
SMART	SM00355	100	151	179	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MSNISSGNSS TAGAEEEYEE QDQQQTSNVL LPSSVHQDQD LPNKKRRKLP GNPDPSAEVI 60 ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTNTDNI RKRRVYICPE 120 PTCIHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHS KTRDSFVTHR 180 AFCDALTEEN KVVNQSLAST TGPSHTQVSE LMSNSMLNLP EIRNPNMKIP LKPSPQALNI 240 QTPTGPLLNM AGTMFTSPRN LSSSSFPGFQ LSTNSSNMSS SATALSQQAA QMGATVSSSM 300 NSPLMVQKEY PSLFQSDHNH QTQIGSSVHG FFGSMLQNGT QETLISELLN SNSSTAGDHQ 360 KTSRMQNQGW YNGLFNETKI NGESGNDSLT LDFLGIGDMR QRSSHEMHQQ QQQQEMSFEQ 420 QKEMSSMWDD

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MSNISSGNSS TAGAEEEYEE QDQQQTSNVL LPSSVHQDQD LPNKKRRKLP GNPDPSAEVI  60
ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTNTDNI RKRRVYICPE  120
PTCIHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHS KTRDSFVTHR  180
AFCDALTEEN KVVNQSLAST TGPSHTQVSE LMSNSMLNLP EIRNPNMKIP LKPSPQALNI  240
QTPTGPLLNM AGTMFTSPRN LSSSSFPGFQ LSTNSSNMSS SATALSQQAA QMGATVSSSM  300
NSPLMVQKEY PSLFQSDHNH QTQIGSSVHG FFGSMLQNGT QETLISELLN SNSSTAGDHQ  360
KTSRMQNQGW YNGLFNETKI NGESGNDSLT LDFLGIGDMR QRSSHEMHQQ QQQQEMSFEQ  420
QKEMSSMWDD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-17	147	189	3	61	Zinc finger protein JACKDAW
5b3h_F	1e-17	147	189	3	61	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	47	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628988.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Refseq	XP_016515957.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	5e-90	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A1S4DRB6	0.0	A0A1S4DRB6_TOBAC; protein indeterminate-domain 2-like
STRING	XP_009628988.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	6e-78	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]