PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00366g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 141aa MW: 15669.9 Da PI: 10.7895 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 57.6 | 3.5e-18 | 28 | 105 | 2 | 78 |
-SSTT-----TT-..-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlsea..keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls+a + k + + p+ + l++ C C rf ++ efD++krsCr+rL++hn+rrrk+q+ Niben101Scf00366g00008.1 28 CLVDGCNADLSQAnaESITAAIKFVRSIQRLPKSPLGRLSRSDCSFC-RFLSFVEFDDGKRSCRKRLDGHNRRRRKPQP 105 **********9872245678889999999***************999.9***************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.7E-5 | 23 | 90 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 16.264 | 25 | 103 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.92E-14 | 26 | 107 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.6E-7 | 28 | 102 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MESSSSSSSS SSSKRAKASG NIVQVAHCLV DGCNADLSQA NAESITAAIK FVRSIQRLPK 60 SPLGRLSRSD CSFCRFLSFV EFDDGKRSCR KRLDGHNRRR RKPQPDLWPK LLDYILLSSK 120 GRNFCHLAVN KSFQVQLHGL A |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 102 | KRSCRKRLDGHNRRRRKP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764314.1 | 2e-28 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_009764315.1 | 2e-28 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_009764316.1 | 2e-28 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_009764317.1 | 2e-28 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_016482449.1 | 1e-28 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_016482450.1 | 1e-28 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_016482451.1 | 1e-28 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_016482452.1 | 1e-28 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_016482453.1 | 1e-28 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A1S4B0J6 | 3e-27 | A0A1S4B0J6_TOBAC; squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A1U7VPP0 | 4e-27 | A0A1U7VPP0_NICSY; squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A240EUR0 | 3e-27 | A0A240EUR0_TOBAC; Squamosa promter-binding-like protein 6 | ||||
STRING | XP_009764314.1 | 6e-28 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 7e-17 | SBP family protein |