PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00352g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 289aa    MW: 32325.9 Da    PI: 4.9108
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00352g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like39.99.1e-132145125
                   G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
                              kprl+Wtp+LH+rFv+av+qLGG+e
  Niben101Scf00352g02001.1 21 KPRLKWTPDLHQRFVDAVAQLGGPE 45
                              79*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-111947IPR009057Homeodomain-like
TIGRFAMsTIGR015576.8E-82147IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MYLQNAHQSK DMNLVLSSDA KPRLKWTPDL HQRFVDAVAQ LGGPESKSEL CAIVPDDTKE  60
NEISSGLYQR TYFDAEFREP QSDKLSLDNC DGAQNQMNES WKIARALQMQ MEVQRKLHQQ  120
IEKAQETLAG YDTSSVGVEL AKAELSQLVS MVNMGCCPTS PLSATTEIDG TSISKNTERK  180
QLNGEILCSL ESSLTSSESS GRKEDQNDTR STNTSISLSL NSQTKEKKRR RNNICDDICV  240
EQSSSKRCHS QRSGENVAQT ELLETIDLNN KCPNEYEHGP KVIDLNNKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232055.11e-154PREDICTED: myb family transcription factor PHL8-like isoform X1
TrEMBLA0A1J6LBC41e-152A0A1J6LBC4_NICAT; Myb family transcription factor phl8
STRINGXP_009777109.11e-150(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60361932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.13e-32G2-like family protein