PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00340g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 516aa    MW: 55168.9 Da    PI: 6.8155
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00340g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.91.1e-4174148276
                               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                               CqvegC++dls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l+efD++krsCrrrLa hnerrrk+
  Niben101Scf00340g00006.1  74 CQVEGCQVDLSDAKAYYSRHKVCGMHSKSPNVIVAGLEQRFCQQCSRFHQLTEFDQGKRSCRRRLACHNERRRKP 148
                               *************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.6E-3567135IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.85571148IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.5E-3972151IPR004333Transcription factor, SBP-box
PfamPF031102.9E-3174147IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0042127Biological Processregulation of cell proliferation
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MNVQWNSVME LGSVSSPGSN SSSSDSLNDL KFGKKIYFEN VGGGSSPVTG AGNLPPASKR  60
GRGGLVQGGQ PPKCQVEGCQ VDLSDAKAYY SRHKVCGMHS KSPNVIVAGL EQRFCQQCSR  120
FHQLTEFDQG KRSCRRRLAC HNERRRKPPS GSLFSAHYGS LSSSVFENNS SKSGSFVLDF  180
SSHPNLSEAS WTTGASEKGW DHQSTASGKF LQRHWLNNSE NTASEFVLQG SVTRTNYVPS  240
GECFSGVSDS STGALSLLSN RSWGSRNPPS SLGANIDGIH TIQPSDSHGA PTNHFSSPSL  300
RFKGNETSSS SHEMPSDLGL GQISQAADDQ YCENNSSKSG SFVLDFSSHP NLSEASWTTG  360
ASEKGWDHQS TASGKFLQRH WLNNSENTAS EFVLQGSVTR TNYVPSGECF SGVSDSSTGA  420
LSLLSNRSWG SRNPPSSLGA NIDGIHTIQP SDSHGAPTNH FSSPSLRFKG NETSSSSHEM  480
PSDLGLGQIS QAADDQYCGE LGIGQQSGCQ NMELDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-29741471184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00412DAPTransfer from AT3G57920Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254891.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A1J6ICH40.0A0A1J6ICH4_NICAT; Squamosa promoter-binding-like protein 9
STRINGXP_009776998.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.13e-47squamosa promoter binding protein-like 15