PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00339g03027.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 330aa    MW: 37060.8 Da    PI: 6.5009
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00339g03027.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl
  Niben101Scf00339g03027.1 14 RGPWTAEEDAKILAYVASHGIGNWTLVPHKAGLNRCGKSCRLRWTNYL 61
                              89********************************************97 PP
2Myb_DNA-binding49.97.4e-1668110246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +++T++E+e +++++k  G++ W++Ia+ ++ gRt++++k++w++
  Niben101Scf00339g03027.1  68 DNFTPQEEECILELHKTIGSR-WSLIAKQLP-GRTDNDVKNYWNT 110
                               68*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.894965IPR017930Myb domain
SuperFamilySSF466893.39E-3111108IPR009057Homeodomain-like
SMARTSM007176.8E-151363IPR001005SANT/Myb domain
PfamPF002498.0E-161461IPR001005SANT/Myb domain
CDDcd001674.77E-121661No hitNo description
Gene3DG3DSA:1.10.10.608.7E-2565117IPR009057Homeodomain-like
SMARTSM007179.2E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129418.96966116IPR017930Myb domain
CDDcd001671.65E-1169112No hitNo description
PfamPF002491.7E-1469110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRPPCCDKA NVKRGPWTAE EDAKILAYVA SHGIGNWTLV PHKAGLNRCG KSCRLRWTNY  60
LRPDLKHDNF TPQEEECILE LHKTIGSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLVNMG  120
IDPVTHKPFA QVFAEYGKIS GLPIQNSRNN ICLPNNTTEI SKQFSLSSGT PHDKFVHKNM  180
NDQLQENYST QKYTCDPKAL YQVIHEETLQ THSFSEVSPL ISSATSFDPA VFSSLSSCAS  240
VQSQFVLGDL CTSTDTEPKQ EYQLQAGIYL SNSVHTDNPT CGEVTEVEEK QSVKEATCSS  300
AVDSFVDTIL ARDKQMLMDF PPLLDVYLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30141167108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764550.10.0PREDICTED: transcription factor WER
TrEMBLA0A1U7VRM80.0A0A1U7VRM8_NICSY; transcription factor WER
STRINGXP_009764550.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-70myb domain protein 103