PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00337g06003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 390aa MW: 42789.6 Da PI: 6.9796

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00337g06003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	38.7	2.6e-12	75	101	52	78
TTT--SS--S-STTTT-------S--- CS SBP 52 lsefDeekrsCrrrLakhnerrrkkqa 78 efD++krsCr+rLa+hnerrrk+q+ Niben101Scf00337g06003.1 75 TAEFDDGKRSCRKRLAGHNERRRKPQT 101 579*********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	9.622	22	99	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.08E-9	75	102	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-5	76	98	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MMENAAAANV LLVITSGGGS LKQVCILAEQ EDSFNHMLVL QVQGFKELLL QHHISSAKIY 60 SAVAFFINQN TICTTAEFDD GKRSCRKRLA GHNERRRKPQ TGSAGTRFQG TPFATSSFIC 120 EDIPGTRFQG TPFATSSFIC EDILGSGLLH QPKHNMHDWY KNVKVEHSAD YSPQLTMPFT 180 NGHSQPRSLF STSYHTDKHP PALHDEGITA ITRSKNNESS NSYLNDIEGS DFVSRSLFHN 240 TSIGSEVLNV MDSASNFQGI SNSGCALSLL SSQSQDSSNY SSLVPNAHHL ITLSSNTHYN 300 VTQTSVKFPG VNLKDSTSNA SSIFNLSGSV SAEDRMEQIL RNNCGINVSI HGSDHVNTKN 360 LLSCEDGPTI DLLQLSSQLH RVEHQRHSMK

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MMENAAAANV LLVITSGGGS LKQVCILAEQ EDSFNHMLVL QVQGFKELLL QHHISSAKIY  60
SAVAFFINQN TICTTAEFDD GKRSCRKRLA GHNERRRKPQ TGSAGTRFQG TPFATSSFIC  120
EDIPGTRFQG TPFATSSFIC EDILGSGLLH QPKHNMHDWY KNVKVEHSAD YSPQLTMPFT  180
NGHSQPRSLF STSYHTDKHP PALHDEGITA ITRSKNNESS NSYLNDIEGS DFVSRSLFHN  240
TSIGSEVLNV MDSASNFQGI SNSGCALSLL SSQSQDSSNY SSLVPNAHHL ITLSSNTHYN  300
VTQTSVKFPG VNLKDSTSNA SSIFNLSGSV SAEDRMEQIL RNNCGINVSI HGSDHVNTKN  360
LLSCEDGPTI DLLQLSSQLH RVEHQRHSMK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786196.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
TrEMBL	A0A1U7X961	0.0	A0A1U7X961_NICSY; squamosa promoter-binding-like protein 6
STRING	XP_009786196.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5187	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-09	SBP family protein