PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00321g03008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 451aa    MW: 50766.1 Da    PI: 8.4574
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00321g03008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-20116165255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  Niben101Scf00321g03008.1 116 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEDAARAYDKAAIEFRG 165
                               59*******.**********82....48************************998 PP
2AP263.35.2e-20320369255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  Niben101Scf00321g03008.1 320 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEDAARAYDKAAIEFRG 369
                               59*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-37116179IPR001471AP2/ERF domain
PfamPF008471.2E-13116165IPR001471AP2/ERF domain
PROSITE profilePS5103224.829116173IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22116173IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-31116173IPR001471AP2/ERF domain
PRINTSPR003671.6E-11117128IPR001471AP2/ERF domain
CDDcd000181.14E-31117172No hitNo description
PRINTSPR003671.6E-11139155IPR001471AP2/ERF domain
PROSITE profilePS5103224.829320377IPR001471AP2/ERF domain
SMARTSM003802.3E-37320383IPR001471AP2/ERF domain
PfamPF008471.2E-13320369IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22320377IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-31320377IPR001471AP2/ERF domain
CDDcd000181.14E-31321376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MQRSTKKVKQ EETASINHQI SQPKFTDEQE FSIMVSALKN VITGDTTQEF QYIISSSSPS  60
TCMSSLPPLF RVPTEPEPCQ FCKIKGCLGC NYFGASVAAA VDNKKTNIIV KKKKKNYRGV  120
RQRPWGKWAA EIRDPRRAAR VWLGTFNTAE DAARAYDKAA IEFRGPRAKL NFSFADYTSI  180
QQQNATTSSQ QQEEPVQLEQ GIKTDSSTKT TKQEETVSVN HLISQPKFTD EQEFSIMVSA  240
LKNVITGHTT QEFQYIISSS SPSTCMSSLE PPLFRVPTEP EPCQFCKIIG CLGCNYFGAS  300
VAADDDNKKT NIIVKKKKKN YRGVRQRPWG KWAAEIRDPR RAARVWLGTF NTAEDAARAY  360
DKAAIEFRGP RAKLNFSFAD YTSIQQQNAT TSTTFSIFQQ QQEPVQLQQG EEEDFWDQLM  420
ASDNEIQDCL RMMDFNGESS YSGGGSIAHS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23113376262ATERF1
3gcc_A2e-23113376262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762423.11e-142PREDICTED: ethylene-responsive transcription factor ERF109-like
RefseqXP_016439810.11e-142PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ064e-36EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A1S3XIL41e-140A0A1S3XIL4_TOBAC; ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1U7V7Q01e-140A0A1U7V7Q0_NICSY; ethylene-responsive transcription factor ERF109-like
STRINGXP_009762423.11e-141(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.17e-31redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]