PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf00315g02001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 29615.8 Da PI: 9.3309 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 8e-18 | 99 | 148 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr p++ + r++lg++ tae+Aa+a++ a+++++g Niben101Scf00315g02001.1 99 TFRGVRKRN-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 148 59****887.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.182 | 99 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-21 | 99 | 157 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-31 | 99 | 157 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-34 | 99 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 100 | 111 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 100 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.83E-32 | 100 | 156 | No hit | No description |
PRINTS | PR00367 | 4.3E-10 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 266 aa Download sequence Send to blast |
MEDHDLHLKF SISSSSSSIT SSSFASSSNG INSPSTTTSS TSSSSFHETI NAKTSSNGYT 60 CKSKKSSKID QDFTKNGNGH GNEENKKKRK NQGDEKHPTF RGVRKRNWGK WVSEIRQPRK 120 KSRIWLGTYP TAEMAARAHD VAALAIKGNS AYLNFPRLAD QLPRPASTSP KDIQAAAAKA 180 ATSTFLEENI VRDKTEFQIK MQSSHSSTNL NRQELLLNSP SMDHDDTFFD LPDIVIDQYP 240 ISTWQLVAGA DSGIFRLEEP FLWECY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-17 | 96 | 156 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019244119.1 | 1e-138 | PREDICTED: ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q8LBQ7 | 5e-57 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A1J6J516 | 1e-137 | A0A1J6J516_NICAT; Ethylene-responsive transcription factor erf034 | ||||
STRING | XP_009771308.1 | 1e-136 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44940.1 | 5e-52 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|