PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00304g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 457aa    MW: 48889.2 Da    PI: 4.866
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00304g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-091151521047
                               HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +l++++  ++G+g+Wk+I+r+  + Rt+ q+ s+ qk+
  Niben101Scf00304g02003.1 115 KLFLKGLDKYGKGDWKSISRHCVLSRTPQQVASHAQKF 152
                               69**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1859IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-71063IPR009057Homeodomain-like
CDDcd001678.24E-41257No hitNo description
PROSITE profilePS5129414.26191157IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-792154IPR009057Homeodomain-like
SuperFamilySSF466891.36E-1193157IPR009057Homeodomain-like
SMARTSM007171.5E-495155IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.1E-1195155IPR006447Myb domain, plants
CDDcd001673.56E-898153No hitNo description
PfamPF002499.6E-6115151IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSTDRTCNGS FWTKEEDKIF ENTLAVYSSD DDLLMRMAAA LPGKSLEDIK NHYEVLVEDV  60
NAIESGLVPL PRYRNMQSHS RNKSRLPKAD VERRKGVAWT EEEHKCVSLH ADGNKLFLKG  120
LDKYGKGDWK SISRHCVLSR TPQQVASHAQ KFFNRREGVN KERRRASIHD ITSVDIETAG  180
TSQLPNPENM IGPAGGGSLV TASTNDKTGA VDSGVVSTGV GTFTSPIAAI ENKSMLPQEI  240
TVADPVIAVS GGESSGPGAA FANEVNRSYH DVNDDFILGI DDLIMEQEGT YEAGIQVDAE  300
RSLLPSQQQS TAAGSEIYGH PVTRIGSELE ALITEHMVED NEISSIFDVG KTPSSHAMLS  360
SAAHSGMSSY AVAAHSGMSS YTVAAHSGIS SYTVGSFGFN NAPENRVAAP GGGLTIDSQQ  420
LPSIAPSSNF GVGVCPSSNT SVRDEGIFYL GDLFPDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-13881785RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016444771.10.0PREDICTED: uncharacterized protein LOC107770029
TrEMBLA0A1S3XXU30.0A0A1S3XXU3_TOBAC; uncharacterized protein LOC107770029
STRINGXP_009798833.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-55MYB family protein