PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00298g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 223aa    MW: 24675.2 Da    PI: 4.5207
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00298g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-182171155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              s+y+GVr +k +g+Wv+e+r p++   r r++lg+++tae+Aa+a +aa  +l+g
  Niben101Scf00298g00001.1 21 SKYRGVRKRK-WGKWVSEVRLPNS---RERIWLGSYDTAEKAARAFDAALFCLRG 71
                              89*****999.*******999833...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-212180IPR016177DNA-binding domain
PfamPF008471.6E-112171IPR001471AP2/ERF domain
CDDcd000181.68E-292281No hitNo description
Gene3DG3DSA:3.30.730.108.6E-302280IPR001471AP2/ERF domain
PROSITE profilePS5103222.3392279IPR001471AP2/ERF domain
SMARTSM003801.2E-322285IPR001471AP2/ERF domain
PRINTSPR003671.5E-102334IPR001471AP2/ERF domain
PRINTSPR003671.5E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVKPNVKDSC ENAPSSSSSS SKYRGVRKRK WGKWVSEVRL PNSRERIWLG SYDTAEKAAR  60
AFDAALFCLR GKTANFNFPE NPPEIVNGRS MTPAEIQVAA AQFANSDSEP RVSNWVNPRD  120
NSDPSSSSSE IFCAESPSVS VSNGLVGLES EKTEMTLDNG FVDMFSSMGT ANDMSNFGIF  180
PGFDDLSGEY YVPPLPHLDN TAEENYMNYD GFHLQGSSFL WNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-171780973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759846.11e-148PREDICTED: ethylene-responsive transcription factor ERF017
RefseqXP_016496753.11e-148PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLA0A1S4C6K11e-147A0A1S4C6K1_TOBAC; ethylene-responsive transcription factor ERF017-like
TrEMBLA0A1U7V4E61e-147A0A1U7V4E6_NICSY; ethylene-responsive transcription factor ERF017
STRINGXP_009759846.11e-148(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-59ERF family protein