PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00280g02002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 265aa MW: 29525.6 Da PI: 10.1538

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00280g02002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.2	2.3e-30	194	251	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++p +YY+C+s gCp++k+ver+ ++p+++++tYegeHnh+ Niben101Scf00280g02002.1 194 DDYSWRKYGQKPIKGSPHPSAYYKCSSVrGCPARKHVERAMDEPTMLIVTYEGEHNHS 251 99**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	9.5E-15	144	190	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.7E-32	179	251	IPR003657	WRKY domain
PROSITE profile	PS50811	29.402	187	253	IPR003657	WRKY domain
SuperFamily	SSF118290	6.41E-26	189	251	IPR003657	WRKY domain
SMART	SM00774	2.2E-34	192	252	IPR003657	WRKY domain
Pfam	PF03106	5.5E-26	194	250	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEIEMVTDAA VTKFKNVISL LGRTRTGHAR FRRAPTTSPP KVKKDLIDSK VYCPTPIQQV 60 PPVAYELYHH QFFQNPRDGV VENQELVTKK SIDFSFSPDI SRSNSFNMST LTESSKQLSP 120 SSSFKISQVS SAGNPPLTTS SSFKRKCCSS ENGLSGKCSS SSGRCHCSRR RKLRLKRVER 180 VPAISMKMSD IPPDDYSWRK YGQKPIKGSP HPSAYYKCSS VRGCPARKHV ERAMDEPTML 240 IVTYEGEHNH SLSVAATSSL ILESS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	180	252	2	73	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804436.1	1e-175	PREDICTED: probable WRKY transcription factor 15
Refseq	XP_016469909.1	1e-175	PREDICTED: probable WRKY transcription factor 15 isoform X1
Swissprot	O22176	7e-76	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	A0A1S3ZZY2	1e-174	A0A1S3ZZY2_TOBAC; probable WRKY transcription factor 15 isoform X1
TrEMBL	A0A1U7YR43	1e-174	A0A1U7YR43_NICSY; probable WRKY transcription factor 15
STRING	XP_009804436.1	1e-174	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1220	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24240.1	2e-58	WRKY DNA-binding protein 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]