PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00279g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 348aa MW: 37307.9 Da PI: 6.6758

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00279g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.1	6.4e-08	185	209	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 e Cr + GtC++G++C+F Hg+ Niben101Scf00279g00007.1 185 SEVCRWWGDAGTCRFGSKCRFVHGK 209 5778888889*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	3.4E-12	180	214	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-8	182	214	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.3E-5	182	209	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.192	182	210	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-5	184	209	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MNELTSLLEE FEESMDLFYG NSNDSQASKV QSLDVSPINS QNFIGHGRFY PGPKTRILDP 60 YTSSDCSGSS SNRVLSPLAR YLHSSSSVSF ASDSPERRSL VNTSSGNRSG SGGGGVFRSP 120 LASIENIEIL PAFTPVKVEE DVVVMDGILV EPKHGARAKS SPSTSDSGGK WSSSTSGSEN 180 SSHKSEVCRW WGDAGTCRFG SKCRFVHGKK ELRPTAFATW NHSEAPSSRS YSSGSCAYGP 240 RGRSAHHQVH SAASSTESAA MATPTTVKKI VSTKHKEPPS SDSSPSSTTS TIAISGTDWS 300 PLDDNIEVSL PSGEKFPSRE DVDAYIQTVL YGPSGRKRLP VFVEFSEE

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MNELTSLLEE FEESMDLFYG NSNDSQASKV QSLDVSPINS QNFIGHGRFY PGPKTRILDP  60
YTSSDCSGSS SNRVLSPLAR YLHSSSSVSF ASDSPERRSL VNTSSGNRSG SGGGGVFRSP  120
LASIENIEIL PAFTPVKVEE DVVVMDGILV EPKHGARAKS SPSTSDSGGK WSSSTSGSEN  180
SSHKSEVCRW WGDAGTCRFG SKCRFVHGKK ELRPTAFATW NHSEAPSSRS YSSGSCAYGP  240
RGRSAHHQVH SAASSTESAA MATPTTVKKI VSTKHKEPPS SDSSPSSTTS TIAISGTDWS  300
PLDDNIEVSL PSGEKFPSRE DVDAYIQTVL YGPSGRKRLP VFVEFSEE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801215.1	1e-177	PREDICTED: tristetraprolin-like
Refseq	XP_009801216.1	1e-177	PREDICTED: tristetraprolin-like
Refseq	XP_009801217.1	1e-177	PREDICTED: tristetraprolin-like
Refseq	XP_009801218.1	1e-177	PREDICTED: tristetraprolin-like
Refseq	XP_016438840.1	1e-177	PREDICTED: tristetraprolin-like
Refseq	XP_016438841.1	1e-177	PREDICTED: tristetraprolin-like
Refseq	XP_016438842.1	1e-177	PREDICTED: tristetraprolin-like
TrEMBL	A0A1S3XG02	1e-176	A0A1S3XG02_TOBAC; tristetraprolin-like
TrEMBL	A0A1U7YQU8	1e-176	A0A1U7YQU8_NICSY; tristetraprolin-like
STRING	XP_009801215.1	1e-177	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7765	18	24