PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00276g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 24801.3 Da PI: 9.9699 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28 | 3.9e-09 | 47 | 76 | 4 | 36 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapsk 36 +h ++Er+RR+riN +++L++l P+++ + Niben101Scf00276g00010.1 47 THAMAERKRRERINAHLHTLKKLFPHLP---KL 76 8*************************73...32 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.98E-8 | 40 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.79E-4 | 46 | 75 | No hit | No description |
Pfam | PF00010 | 1.9E-6 | 47 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-6 | 47 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 5.38E-6 | 127 | 196 | No hit | No description |
PROSITE profile | PS51671 | 8.505 | 128 | 207 | IPR002912 | ACT domain |
Gene3D | G3DSA:3.30.70.260 | 2.6E-7 | 128 | 195 | No hit | No description |
CDD | cd04873 | 0.00611 | 130 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MLSSLQGCNG FLQRANSVQH LHQRSSNMVD EYEKSTRKNK SKDAALTHAM AERKRRERIN 60 AHLHTLKKLF PHLPKLKELR KKVAQQMETQ KDSEGNYNGL SSFFLPGEND ELLVSYYEES 120 ESDERTVKAT VCCEDRPGLN RDLSTAVRLV QGRVIKAEMA TVGGRTKAEM VVVLCKVGGG 180 EKDIGQLRRA LKAVVENRAL GLGSSLNVGR RLDDNKWTCF G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 56 | ERKRRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779545.1 | 1e-149 | PREDICTED: putative transcription factor bHLH107 isoform X1 | ||||
Refseq | XP_016461574.1 | 1e-149 | PREDICTED: putative transcription factor bHLH107 | ||||
TrEMBL | A0A1S3ZB47 | 1e-148 | A0A1S3ZB47_TOBAC; putative transcription factor bHLH107 | ||||
TrEMBL | A0A1U7WZA1 | 1e-148 | A0A1U7WZA1_NICSY; putative transcription factor bHLH107 isoform X1 | ||||
STRING | XP_009779545.1 | 1e-149 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13713 | 13 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 8e-11 | bHLH family protein |