PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00272g11024.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 272aa MW: 31347.7 Da PI: 5.6705

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00272g11024.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.1	5.3e-17	69	120	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa +k Niben101Scf00272g11024.1 69 RRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRATWK 120 57899**********************************************9 PP
2	HD-ZIP_I/II	121.1	5.8e-39	67	158	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 k rrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRA +ktkqlEkd+++Lkr+++ +k+en++L +++++ Niben101Scf00272g11024.1 67 KIRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRATWKTKQLEKDFDVLKRQFEVVKAENDSLIAHNQK 151 669******************************************************************************** PP HD-ZIP_I/II 87 Lreelke 93 L++e+++ Niben101Scf00272g11024.1 152 LHAEIMS 158 99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.28E-18	54	124	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.228	62	122	IPR001356	Homeobox domain
SMART	SM00389	5.2E-16	65	126	IPR001356	Homeobox domain
CDD	cd00086	2.04E-14	66	123	No hit	No description
Pfam	PF00046	2.2E-14	69	120	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.6E-18	70	129	IPR009057	Homeodomain-like
PRINTS	PR00031	3.9E-5	93	102	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	97	120	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.9E-5	102	118	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.0E-15	122	162	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MTCTNEMAFF PPNLILDTPH QDDHQDFQGV GSFLEKRAMS FSGMEANNNC EEDLCDDGLH 60 EAGREKKIRR LNMEQVKTLE KNFELGNKLE PERKMQLARA LGLQPRQIAI WFQNRRATWK 120 TKQLEKDFDV LKRQFEVVKA ENDSLIAHNQ KLHAEIMSLK NVEQPTEISI NLNKETEGSS 180 CNRSENSSEI MKLDISMRPA AIDCPITRCS RLLFPPPMSP TGVAHLFQRQ VQQSNMKLMD 240 QTVKEETLSS MLSVIDDQSP GFWPWLEQPH FN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019246111.1	1e-160	PREDICTED: homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03	2e-90	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A1J6IHB8	1e-159	A0A1J6IHB8_NICAT; Homeobox-leucine zipper protein athb-13
STRING	XP_009794845.1	1e-158	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	7e-93	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]