PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00272g04001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 362aa    MW: 40802.4 Da    PI: 8.4755
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00272g04001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.2e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd++l   ++++G g+W++ +++ g++R++k+c++rw +yl
  Niben101Scf00272g04001.1 14 KGPWTPEEDQKLMAFIEKYGCGSWRALPAKAGLKRCGKSCRLRWINYL 61
                              79********************************************97 PP
2Myb_DNA-binding54.33.1e-1767112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l
  Niben101Scf00272g04001.1  67 RGKFSLQEEQTIIQLHALLGNR-WSAIAAHVP-NRTDNEIKNYWNTHL 112
                               89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.874961IPR017930Myb domain
SuperFamilySSF466898.44E-3111108IPR009057Homeodomain-like
SMARTSM007177.5E-131363IPR001005SANT/Myb domain
PfamPF002496.0E-161461IPR001005SANT/Myb domain
CDDcd001671.98E-101661No hitNo description
PROSITE profilePS5129426.28962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2665116IPR009057Homeodomain-like
SMARTSM007173.8E-1766114IPR001005SANT/Myb domain
PfamPF002499.3E-1767112IPR001005SANT/Myb domain
CDDcd001671.30E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRSPCCEKV GLKKGPWTPE EDQKLMAFIE KYGCGSWRAL PAKAGLKRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIAAHVPNRT DNEIKNYWNT HLKKRLTKMG  120
IDPTTHKPKT NIFGKDAANL SHMAQWENAR LEAEARLVRE SKKQIIISDQ LGPNLATKPI  180
SHSNIQRNIL PLQTKIPPCL DILKAWQGTN WITKPKTKDM TSSVFDAFFD SPTSTSNLSN  240
NNLFMVPNNN IPGLVDMSSC LVGESNFMEN TKEEVQTEWK CFDKPNNELL SQINDISYSN  300
DSSTYNMSII GQSSSGLIQG FTHLENIVGN GEDNLVDDNN NSNYWNTILN SCTLLPADSP  360
VF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758169.10.0PREDICTED: transcription factor MYB39-like
TrEMBLA0A1U7V7F20.0A0A1U7V7F2_NICSY; transcription factor MYB39-like
STRINGXP_009758169.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.27e-98myb domain protein 16