PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00271g08008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LSD
Protein Properties Length: 379aa    MW: 40553.5 Da    PI: 9.2627
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00271g08008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD137.63.7e-12730124
                   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                              C+gCrt+L YPrGA++V+Ca+C++
  Niben101Scf00271g08008.1  7 CSGCRTILLYPRGASNVCCAVCNA 30
                              **********************97 PP

2zf-LSD144.23e-144670125
                   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                              CggCrtlL+ PrGA+sVRC++C+tV
  Niben101Scf00271g08008.1 46 CGGCRTLLMHPRGASSVRCSCCHTV 70
                              ************************9 PP

3zf-LSD138.71.6e-1284107124
                   zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                               Cg+Cr +L+YP GApsV+Ca+C+ 
  Niben101Scf00271g08008.1  84 CGNCRMMLMYPCGAPSVKCAICHY 107
                               **********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.6E-12432IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-10730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.9E-174373IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-124670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.1E-1181110IPR005735Zinc finger, LSD1-type
PfamPF069433.9E-1284108IPR005735Zinc finger, LSD1-type
PfamPF045354.4E-37202353IPR006702Domain of unknown function DUF588
TIGRFAMsTIGR015693.2E-44208365IPR006459Casparian strip membrane protein
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MQSQLMCSGC RTILLYPRGA SNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAS  60
SVRCSCCHTV NLVPGPNQFA HVYCGNCRMM LMYPCGAPSV KCAICHYITN VNAGDGRVHV  120
HNGTATPASG SSSSTAKARS QNQTVVVQNP MSVDESGKLK LSKHKMAQEN GEKPAVAAGS  180
NNQQLVGKNN NTSNYKPKDY YNWVMALLRL LAFGATISAT LVMALNKQKK TFVVATIGTT  240
PIQATLTAKF QHTPAFVFFV IANGLCSLHN LLMLPACFIG SKYDFKGLRF YVIGVLDMMN  300
VALVSGGASA AAFMGQLGKD GNSHARWNKI CDKFDIYCSH GEGAIIVSFI GLLLMIISTA  360
INIIKLKNIQ NSGNYAIIP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624212.11e-141PREDICTED: CASP-like protein 1B2
RefseqXP_016481045.11e-141PREDICTED: CASP-like protein 1B2
TrEMBLA0A1S4AWQ31e-139A0A1S4AWQ3_TOBAC; CASP-like protein
STRINGXP_009624212.11e-140(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.11e-52lsd one like 1