PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00271g08008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 379aa MW: 40553.5 Da PI: 9.2627

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00271g08008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37.6	3.7e-12	7	30	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C++ Niben101Scf00271g08008.1 7 CSGCRTILLYPRGASNVCCAVCNA 30 **********************97 PP
2	zf-LSD1	44.2	3e-14	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRC++C+tV Niben101Scf00271g08008.1 46 CGGCRTLLMHPRGASSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	38.7	1.6e-12	84	107	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Cr +L+YP GApsV+Ca+C+ Niben101Scf00271g08008.1 84 CGNCRMMLMYPCGAPSVKCAICHY 107 **********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	5.6E-12	4	32	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.2E-10	7	30	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	6.9E-17	43	73	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.4E-12	46	70	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.1E-11	81	110	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.9E-12	84	108	IPR005735	Zinc finger, LSD1-type
Pfam	PF04535	4.4E-37	202	353	IPR006702	Domain of unknown function DUF588
TIGRFAMs	TIGR01569	3.2E-44	208	365	IPR006459	Casparian strip membrane protein

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MQSQLMCSGC RTILLYPRGA SNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAS 60 SVRCSCCHTV NLVPGPNQFA HVYCGNCRMM LMYPCGAPSV KCAICHYITN VNAGDGRVHV 120 HNGTATPASG SSSSTAKARS QNQTVVVQNP MSVDESGKLK LSKHKMAQEN GEKPAVAAGS 180 NNQQLVGKNN NTSNYKPKDY YNWVMALLRL LAFGATISAT LVMALNKQKK TFVVATIGTT 240 PIQATLTAKF QHTPAFVFFV IANGLCSLHN LLMLPACFIG SKYDFKGLRF YVIGVLDMMN 300 VALVSGGASA AAFMGQLGKD GNSHARWNKI CDKFDIYCSH GEGAIIVSFI GLLLMIISTA 360 INIIKLKNIQ NSGNYAIIP

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MQSQLMCSGC RTILLYPRGA SNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAS  60
SVRCSCCHTV NLVPGPNQFA HVYCGNCRMM LMYPCGAPSV KCAICHYITN VNAGDGRVHV  120
HNGTATPASG SSSSTAKARS QNQTVVVQNP MSVDESGKLK LSKHKMAQEN GEKPAVAAGS  180
NNQQLVGKNN NTSNYKPKDY YNWVMALLRL LAFGATISAT LVMALNKQKK TFVVATIGTT  240
PIQATLTAKF QHTPAFVFFV IANGLCSLHN LLMLPACFIG SKYDFKGLRF YVIGVLDMMN  300
VALVSGGASA AAFMGQLGKD GNSHARWNKI CDKFDIYCSH GEGAIIVSFI GLLLMIISTA  360
INIIKLKNIQ NSGNYAIIP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009624212.1	1e-141	PREDICTED: CASP-like protein 1B2
Refseq	XP_016481045.1	1e-141	PREDICTED: CASP-like protein 1B2
TrEMBL	A0A1S4AWQ3	1e-139	A0A1S4AWQ3_TOBAC; CASP-like protein
STRING	XP_009624212.1	1e-140	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	1e-52	lsd one like 1