PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00262g05012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 713aa MW: 80638 Da PI: 5.7515

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00262g05012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	325.4	1.1e-99	328	684	2	355
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfs 85 ++lL++cAea +s + + ++L ++++++sp gdp+ Rla +f++AL+ar a+ + ++++++s++++ ++ l+a++++ Niben101Scf00262g05012.1 328 TSLLTRCAEAAASYNSKTFVEVLRKIRQHSSPFGDPTARLAYCFANALEARFAG--GGGVDTITTSPSKSILsAADFLKAYQVYI 410 689************************************************9..4555556555555443499****** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168 ++P+ ++s++ aN+ I + +++++++HiiDf+i +G+QWp++++ ++ Rp+gpp+l+iTg++ p++g +e++eetg+rL+++ Niben101Scf00262g05012.1 411 TACPFKRMSNIFANKSIAKLTSEASQIHIIDFGILYGFQWPCIIHGISLRPGGPPKLKITGIDFPQPGfrPAERVEETGRRLENY 495 ***************************************************************9************* PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhns 250 ++++gvpfe+++ +ak+++d++le+L+++++E+++Vn+ ++l++++de+v ++ +r++vL+l+k+++P+ +v+ +a +n+ Niben101Scf00262g05012.1 496 CKRFGVPFEYKA-IAKKWDDIKLEDLKIEQDETVVVNCLYRLKNVPDETVLTNInnnPRNAVLRLIKEINPHWFVHGIVNAMYNA 579 ********.7******************************9977655579*********************** PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335 + F +rf eal ++s+ fd++ea++ re+e r+ E+e++gr+i+nv++ceg+er+er e++++W+ r + aGF+++pl++++ k Niben101Scf00262g05012.1 580 SFFTTRFREALFHFSSQFDMFEATMTREDEGRMIFEQEVFGRDIMNVITCEGTERVERPESYKQWSVRNQIAGFRQLPLNQDILK 664 ********************************************************************************* PP GRAS 336 qaklllrkvksdgyrveees 355 ++k+ +r+++ + + v+e++ Niben101Scf00262g05012.1 665 EVKAKVRMFYHRDFLVDEDK 684 ******99999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.874	301	683	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.9E-97	328	684	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MNTNTYVPSV DHRSTYGLEF CHRFAMTSTN LGNEFSSTDH HDVVFFSSSR GTSSNNDEVV 60 VEGGGGGCDQ TVVESDYFDG VFKYIQQMLL EEEEDLESRP CMFQDCIALQ AAEKSFYDAL 120 TDNNNNNDDD PTIVEQCSST GFPVNHGFIG TTHCLQDDNI NHFLDQSDFI SDFDCSNTGI 180 RGNTPWNNNC QVAAVAVAAN DDHRNIYYGV NSTDTNNQGG TSKTEGKKKH NREDCGESSN 240 GPNSKQFASN GAEETEEQTH EEYYDKALLC PDMNPAFYVE DSCDDGSRSS SENAAWDKQK 300 SRHIKQSKRG RPRGTKKGVK INEVVDLTSL LTRCAEAAAS YNSKTFVEVL RKIRQHSSPF 360 GDPTARLAYC FANALEARFA GGGGVDTITT SPSKSILSAA DFLKAYQVYI TACPFKRMSN 420 IFANKSIAKL TSEASQIHII DFGILYGFQW PCIIHGISLR PGGPPKLKIT GIDFPQPGFR 480 PAERVEETGR RLENYCKRFG VPFEYKAIAK KWDDIKLEDL KIEQDETVVV NCLYRLKNVP 540 DETVLTNINN NPRNAVLRLI KEINPHWFVH GIVNAMYNAS FFTTRFREAL FHFSSQFDMF 600 EATMTREDEG RMIFEQEVFG RDIMNVITCE GTERVERPES YKQWSVRNQI AGFRQLPLNQ 660 DILKEVKAKV RMFYHRDFLV DEDKRFNAGL SRKSIRNNFL CIRYFSKTPP CIL

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MNTNTYVPSV DHRSTYGLEF CHRFAMTSTN LGNEFSSTDH HDVVFFSSSR GTSSNNDEVV  60
VEGGGGGCDQ TVVESDYFDG VFKYIQQMLL EEEEDLESRP CMFQDCIALQ AAEKSFYDAL  120
TDNNNNNDDD PTIVEQCSST GFPVNHGFIG TTHCLQDDNI NHFLDQSDFI SDFDCSNTGI  180
RGNTPWNNNC QVAAVAVAAN DDHRNIYYGV NSTDTNNQGG TSKTEGKKKH NREDCGESSN  240
GPNSKQFASN GAEETEEQTH EEYYDKALLC PDMNPAFYVE DSCDDGSRSS SENAAWDKQK  300
SRHIKQSKRG RPRGTKKGVK INEVVDLTSL LTRCAEAAAS YNSKTFVEVL RKIRQHSSPF  360
GDPTARLAYC FANALEARFA GGGGVDTITT SPSKSILSAA DFLKAYQVYI TACPFKRMSN  420
IFANKSIAKL TSEASQIHII DFGILYGFQW PCIIHGISLR PGGPPKLKIT GIDFPQPGFR  480
PAERVEETGR RLENYCKRFG VPFEYKAIAK KWDDIKLEDL KIEQDETVVV NCLYRLKNVP  540
DETVLTNINN NPRNAVLRLI KEINPHWFVH GIVNAMYNAS FFTTRFREAL FHFSSQFDMF  600
EATMTREDEG RMIFEQEVFG RDIMNVITCE GTERVERPES YKQWSVRNQI AGFRQLPLNQ  660
DILKEVKAKV RMFYHRDFLV DEDKRFNAGL SRKSIRNNFL CIRYFSKTPP CIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-47	327	659	5	329	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798121.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A1U7Y860	0.0	A0A1U7Y860_NICSY; scarecrow-like protein 30
STRING	XP_009798121.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-142	SCARECROW-like 14