PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00254g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 344aa    MW: 39500 Da    PI: 5.9206
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00254g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg W++eEd++l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  Niben101Scf00254g01002.1 14 RGLWSPEEDDKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                              788*******************************************97 PP
2Myb_DNA-binding53.36.3e-1767111147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rgr+T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
  Niben101Scf00254g01002.1  67 RGRFTPEEEKLIISLHGAVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                               89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.793961IPR017930Myb domain
SuperFamilySSF466898.61E-3011108IPR009057Homeodomain-like
SMARTSM007174.5E-121363IPR001005SANT/Myb domain
PfamPF002494.6E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-251568IPR009057Homeodomain-like
CDDcd001671.19E-101761No hitNo description
PROSITE profilePS5129425.29662116IPR017930Myb domain
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1567111IPR001005SANT/Myb domain
CDDcd001671.91E-1169112No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2569117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDDKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGAVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKLKRPS  120
KPSTNTTNSI NDQQQQRSQL AYNTITTNPP EIFLTQDIGI TKSQVLQDSA QLINSPNQLF  180
FFDNGSLDTM TNVNDATIRE TNNASLFQEI SVLNSEFWQV DQQQQHQVQT SYTMGMDSNY  240
LPPLIETMVS PLEIPSSKYN NSMIVEGQDN NQVNEEWSST CSRIIRTSRE MVQSNEEWSQ  300
IDAQQCCPSY LFWDQEIRSL SGNEIIDPST SNNLGQILSS FPSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25141167108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793072.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A1U7XM010.0A0A1U7XM01_NICSY; transcription repressor MYB6-like
STRINGXP_009793072.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124391722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.14e-86myb domain protein 103