PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00253g01016.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 461aa MW: 50718.1 Da PI: 6.7932

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00253g01016.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.6e-06	349	387	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Niben101Scf00253g01016.1 349 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 387 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.21E-7	330	391	No hit	No description
PROSITE profile	PS50888	12.424	338	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-9	348	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-12	348	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0036	349	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MAEEFQLGRG NWWESSSSSS TTSSSRNNKF ESGILSSTTT TLSSVSTALN SMASNFGCWP 60 TGIEDIKARS SLNPVSVSAS DNSCMVFPAD PQKLHASESG GLNLQVRGLG LPSQGLDWNQ 120 PFFRGEKAGS GFRSILEQGL SSDENYQQEG SCQQDHHWTQ KIYTGNDFNN KQMDQGISLD 180 HQPVFNAPNM SSNLDNAPYG SPSNMFQGLL LSDSQQESNF TSTRSLYYPP YNPSNCDVNP 240 AAADVMPTSS SSFWSKFPKQ QWPMPPPHGQ SHFSGTPFWT ATSAAMDDVR SGFQLPSIHQ 300 QLPNPTVDTK PKHTVEDRNI RTIAKKSGSE TSNKRPRNEA PSQMPAFKVR KEKMGDRITA 360 LQQLVSPFGK TDTASVLSEA IEYIKFLHEQ VNVLSTPYMK SGASMQHHQQ STGIKSNVNP 420 EGEKQDLRSR GLCLVPVSST FPVTHETTVD FWTPTFGGTF R

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MAEEFQLGRG NWWESSSSSS TTSSSRNNKF ESGILSSTTT TLSSVSTALN SMASNFGCWP  60
TGIEDIKARS SLNPVSVSAS DNSCMVFPAD PQKLHASESG GLNLQVRGLG LPSQGLDWNQ  120
PFFRGEKAGS GFRSILEQGL SSDENYQQEG SCQQDHHWTQ KIYTGNDFNN KQMDQGISLD  180
HQPVFNAPNM SSNLDNAPYG SPSNMFQGLL LSDSQQESNF TSTRSLYYPP YNPSNCDVNP  240
AAADVMPTSS SSFWSKFPKQ QWPMPPPHGQ SHFSGTPFWT ATSAAMDDVR SGFQLPSIHQ  300
QLPNPTVDTK PKHTVEDRNI RTIAKKSGSE TSNKRPRNEA PSQMPAFKVR KEKMGDRITA  360
LQQLVSPFGK TDTASVLSEA IEYIKFLHEQ VNVLSTPYMK SGASMQHHQQ STGIKSNVNP  420
EGEKQDLRSR GLCLVPVSST FPVTHETTVD FWTPTFGGTF R

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019229330.1	0.0	PREDICTED: transcription factor bHLH123-like
TrEMBL	A0A314KLI6	0.0	A0A314KLI6_NICAT; Transcription factor bhlh123
STRING	XP_009803615.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	6e-65	bHLH family protein