PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00238g02005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 26658.9 Da PI: 7.1651 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++l v+++G ++W+ +++ g+ R++k+c++rw +yl Niben101Scf00238g02005.1 14 RGAWSEEEDDKLRAFVEKYGHPNWRQLPKYAGLMRCGKSCRLRWMNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.3e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ + eE+el+++++++lG++ W++Ia++++ gR+++++k+ w+ + Niben101Scf00238g02005.1 67 KGNYSHEEEELIIKLHNELGNR-WSAIAKKLP-GRSDNDIKNQWHAH 111 7899******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.298 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.07E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.38E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 19.547 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-25 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.62E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MVRTPSVDKH GIKRGAWSEE EDDKLRAFVE KYGHPNWRQL PKYAGLMRCG KSCRLRWMNY 60 LRPGLKKGNY SHEEEELIIK LHNELGNRWS AIAKKLPGRS DNDIKNQWHA HLKKRANIYT 120 NLSTSTEQFT ESSQSQQEAG CDMRESLSAS VNAADPSIEV SSSDLSKLYS NCSLLNGMDW 180 IEEDHIRSMQ QLSNIKPLPE DNFFNFCWTN PIDNFQTEPL DNFWRQPFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 14 | 117 | 7 | 109 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016447291.1 | 1e-122 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A1S3Y537 | 1e-121 | A0A1S3Y537_TOBAC; myb-related protein Myb4-like | ||||
STRING | XP_009766826.1 | 1e-116 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 6e-55 | myb domain protein 58 |