PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00229g03008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 734aa MW: 82940.1 Da PI: 5.4404

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00229g03008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	323	6.1e-99	378	710	1	341
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l++l+++cA+av+++d + a +lL+++++++ p gd +qRla++f+ +L+arla+++s++ykal ++ts ++ l+a++l+ Niben101Scf00229g03008.1 378 LRTLMINCAQAVAADDSKSAYELLKQIRQHSYPIGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADLLKAYHLYL 459 57899*********************************************************999998...9******* PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 +P+ k+s ++ N++I+ +e+++rvH+iDf+i +G+QWp+++q +a+R++gpp+lRiTg+ + +e++ee g+rLa++A+ Niben101Scf00229g03008.1 460 ASCPFRKISSFASNKTIMIKAENATRVHVIDFGILYGFQWPTFIQRIAEREGGPPKLRITGFRP-----AERIEESGRRLADYAR 539 ***********************************************************9.....89********** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 +++vpfe+++ +ak++e++++++L+++++E laV + ++ ++l+de+v +s r+ vL+l+++++P+++++ + ++++ F++ Niben101Scf00229g03008.1 540 SFNVPFEYHA-IAKKWETITVDDLKLDKDEFLAVTCLYRFKNLYDETVVADSSRTVVLNLIRKINPDIFIHGIVNGAYSAPFFVT 623 ******.7********************************************************************* PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa.kl 339 rf eal ++salfd+le+ +pre er +Ere++gre+ nv+aceg er+er et+++W+ r+ a F+++p++ + +++a + Niben101Scf00229g03008.1 624 RFREALFHFSALFDMLETIVPREIPERGLIEREIFGREALNVIACEGWERVERPETYKQWQVRILGARFTQIPFEREFVNKAvEK 708 ************************************************************************97766555144 PP GRAS 340 ll 341 + Niben101Scf00229g03008.1 709 IA 710 44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.586	352	722	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-96	378	710	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MDPRFNGNPS SLNDFRLVNQ SLPISSDGRM ISGPRFELIY PDQKLHNGPR LENSFNLHNF 60 GGVGYINGDR LPSDLESRSD LGVEDDLNED IDFSDAVLSY INQMLMEEEM EDKTDMLQES 120 LELQAKEKIF YEALGKKYPP SPEQNAFSNQ YNESLDDYFS GSIYNSTGNT SENSGNLVDS 180 RAVNISMDYN SAYVEGLSFH NTSVCSSNSG NTIVDGFLDS PVSSLHIPDI YNESQSIWSF 240 RKGVEEASKF LPTNNKLLNN DLLSLESKGE AGYVVKNDEG ETSPTEARGR KNPNRDDNYT 300 EDERSSKQAA VFTESILRSE EFDIVLLHSM GKGEEALEAY RKNLRNAKSK ATVQIPKGSK 360 GGKGRGKKQG GKKEVIDLRT LMINCAQAVA ADDSKSAYEL LKQIRQHSYP IGDGNQRLAH 420 CFADGLEARL AGTGSQIYKA LVNKRTSAAD LLKAYHLYLA SCPFRKISSF ASNKTIMIKA 480 ENATRVHVID FGILYGFQWP TFIQRIAERE GGPPKLRITG FRPAERIEES GRRLADYARS 540 FNVPFEYHAI AKKWETITVD DLKLDKDEFL AVTCLYRFKN LYDETVVADS SRTVVLNLIR 600 KINPDIFIHG IVNGAYSAPF FVTRFREALF HFSALFDMLE TIVPREIPER GLIEREIFGR 660 EALNVIACEG WERVERPETY KQWQVRILGA RFTQIPFERE FVNKAVEKIA NGCYWGGKEE 720 QFTPYRVGNL FKET

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MDPRFNGNPS SLNDFRLVNQ SLPISSDGRM ISGPRFELIY PDQKLHNGPR LENSFNLHNF  60
GGVGYINGDR LPSDLESRSD LGVEDDLNED IDFSDAVLSY INQMLMEEEM EDKTDMLQES  120
LELQAKEKIF YEALGKKYPP SPEQNAFSNQ YNESLDDYFS GSIYNSTGNT SENSGNLVDS  180
RAVNISMDYN SAYVEGLSFH NTSVCSSNSG NTIVDGFLDS PVSSLHIPDI YNESQSIWSF  240
RKGVEEASKF LPTNNKLLNN DLLSLESKGE AGYVVKNDEG ETSPTEARGR KNPNRDDNYT  300
EDERSSKQAA VFTESILRSE EFDIVLLHSM GKGEEALEAY RKNLRNAKSK ATVQIPKGSK  360
GGKGRGKKQG GKKEVIDLRT LMINCAQAVA ADDSKSAYEL LKQIRQHSYP IGDGNQRLAH  420
CFADGLEARL AGTGSQIYKA LVNKRTSAAD LLKAYHLYLA SCPFRKISSF ASNKTIMIKA  480
ENATRVHVID FGILYGFQWP TFIQRIAERE GGPPKLRITG FRPAERIEES GRRLADYARS  540
FNVPFEYHAI AKKWETITVD DLKLDKDEFL AVTCLYRFKN LYDETVVADS SRTVVLNLIR  600
KINPDIFIHG IVNGAYSAPF FVTRFREALF HFSALFDMLE TIVPREIPER GLIEREIFGR  660
EALNVIACEG WERVERPETY KQWQVRILGA RFTQIPFERE FVNKAVEKIA NGCYWGGKEE  720
QFTPYRVGNL FKET

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-43	361	673	1	310	Protein SCARECROW
5b3h_D	3e-43	361	673	1	310	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019235599.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1J6K5Y3	0.0	A0A1J6K5Y3_NICAT; Scarecrow-like protein 9
STRING	XP_009758867.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein