PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00226g01005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 94aa MW: 10686.9 Da PI: 9.0015

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00226g01005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.8e-09	7	53	1	44
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 r++WT++ +l+ +a +q+ ++ +W +ar +g g++ ++k ++ Niben101Scf00226g01005.1 7 RNSWTPQQNKLFERALAQFDKDtpdRWQNVARAVGGGKSVDEVKRHY 53 789*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.31	5	61	IPR017884	SANT domain
SMART	SM00717	1.0E-7	6	59	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-7	7	53	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.34E-12	8	65	IPR009057	Homeodomain-like
CDD	cd00167	3.64E-5	9	53	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MASNSIRNSW TPQQNKLFER ALAQFDKDTP DRWQNVARAV GGGKSVDEVK RHYEILIEDL 60 RRIESGLVPL PTYRNGGTTG VAADEEQRLR INAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	8e-28	10	90	11	88	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009779120.1	9e-61	PREDICTED: protein RADIALIS-like 4
Refseq	XP_016470681.1	9e-61	PREDICTED: protein RADIALIS-like 4
Swissprot	Q1A173	2e-30	RADL6_ARATH; Protein RADIALIS-like 6
TrEMBL	A0A1S4A285	2e-59	A0A1S4A285_TOBAC; protein RADIALIS-like 4
TrEMBL	A0A1U7WY03	2e-59	A0A1U7WY03_NICSY; protein RADIALIS-like 4
STRING	XP_009779120.1	3e-60	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA202	24	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.1	4e-33	RAD-like 6