PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00223g03019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 218aa    MW: 25314.3 Da    PI: 7.3825
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00223g03019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-10848141
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                              +g+W+++Ed++l+ +v+++G ++W+  a+  g++Rt+k+c+
  Niben101Scf00223g03019.1  8 KGPWSEQEDLQLAFYVNLFGDRRWDFLAKVSGLKRTGKSCR 48
                              79**************************************8 PP

2Myb_DNA-binding30.31e-0948722348
                              -HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                              +W++Iar+++ gRt++++k++w++++
  Niben101Scf00223g03019.1 48 RWSRIARKLP-GRTDNEIKNYWRTHM 72
                              4*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.862376IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-9748IPR009057Homeodomain-like
SMARTSM007171.4E-13774IPR001005SANT/Myb domain
PfamPF002493.8E-9848IPR001005SANT/Myb domain
SuperFamilySSF466891.96E-14873IPR009057Homeodomain-like
CDDcd001671.14E-81072No hitNo description
Gene3DG3DSA:1.10.10.607.1E-124973IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAQEEARKGP WSEQEDLQLA FYVNLFGDRR WDFLAKVSGL KRTGKSCRWS RIARKLPGRT  60
DNEIKNYWRT HMRKKAQDDR KHKASISPSS SFSNCSSYFS SNSPDVEFMP ITENNERNFY  120
DTGGLLGVHG QSSLQNAGKK KAGDQEKGKS IKVYSMDEIW KDIELLSEEN ETKNKPILPS  180
TMWEYCPDSP LWMTDEEETK MFPQFYCLDN QNNTFFTG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770621.11e-132PREDICTED: transcription factor MYB48-like
RefseqXP_016514046.11e-132PREDICTED: transcription factor MYB48-like
SwissprotQ53NK65e-42MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A1S4DKY01e-131A0A1S4DKY0_TOBAC; transcription factor MYB48-like
TrEMBLA0A1U7W0921e-131A0A1U7W092_NICSY; transcription factor MYB48-like
STRINGXP_009770621.11e-132(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.14e-41myb domain protein 48
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]