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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Niben101Scf00197g03004.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
SRS |
| Protein Properties |
Length: 290aa MW: 30905 Da PI: 8.8186 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf00197g03004.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 224.9 | 1.5e-69 | 59 | 217 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrel 78
+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++ +++ +++++ +++
Niben101Scf00197g03004.1 59 VGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQHNQQqqqtqqlslRADSNIIPKRP 143
7899***************************************************999888776655555555533333333334 PP
DUF702 79 kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+++ s+l++t+l+ +s e+ + +P+evss+avfrcv+vs++dd+e+++aYqtav+igGh+fkGiLydqG e
Niben101Scf00197g03004.1 144 RENPGSSLACTRLPVISSGLEVGGH-FPAEVSSQAVFRCVKVSAIDDAEDQFAYQTAVNIGGHLFKGILYDQGSE 217
77899**********9999777765.***********************************************87 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MDFSVGVGPS NNRRIISGSS SSSGNNNIVG DDNNNNNNHN YSNSFRVMRP TAGSSSSGVG 60
GMNCQDCGNQ AKKDCPHLRC RTCCKSRGFQ CQTHVKSTWV PAAKRRERQQ QLAALQQQQH 120
NQQQQQTQQL SLRADSNIIP KRPRENPGSS LACTRLPVIS SGLEVGGHFP AEVSSQAVFR 180
CVKVSAIDDA EDQFAYQTAV NIGGHLFKGI LYDQGSEGRY SGGGGGGESS SGSGAAQQAL 240
NFITGTTTST TAAAATSHQQ QHGTMFDPSV YPTPINAFMA GTQFFPPPRS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G51060.1 | 3e-60 | Lateral root primordium (LRP) protein-related |
