PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00182g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 26750.2 Da PI: 6.6307 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.2 | 1.5e-08 | 71 | 104 | 1 | 37 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskK 37 ++ +hn+ Er RR++ Ns + Lr+llP +++K Niben101Scf00182g00001.1 71 KKLNHNASERDRRKKFNSLCSSLRSLLPAT---DHTK 104 6789************************97...6666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.41E-7 | 62 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.566 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-7 | 71 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-6 | 71 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MAVSSPLFSN FDVCLADPKS CEQNTIEAPV SLGINNIPVH YSSSQPSIVH SEFKNFDKIN 60 GDNDHLDGNV KKLNHNASER DRRKKFNSLC SSLRSLLPAT DHTKEVERLR QKKEDLTLRS 120 FPKKEYSADF NKQTMISGGI QSSLSVISVN QVGNREVIIH ISTLKINKSS FAEAVSELEE 180 DGLLLLNASS FETLGDKVFY NLHFQAKGTL PINVQILRDK LLSYYEKEDN SLNLVYEV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019263244.1 | 1e-137 | PREDICTED: transcription factor ORG2-like | ||||
TrEMBL | A0A1S3ZNR3 | 1e-120 | A0A1S3ZNR3_TOBAC; transcription factor bHLH100-like isoform X1 | ||||
TrEMBL | A0A1U7W795 | 1e-120 | A0A1U7W795_NICSY; transcription factor bHLH100-like isoform X1 | ||||
STRING | XP_009616456.1 | 1e-121 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2226 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 3e-35 | bHLH family protein |