PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00180g10005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 283aa MW: 32203 Da PI: 5.3857

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00180g10005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	109	2.4e-34	37	93	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + lkcprC s ntkfCyynny+ sqPr++Ck C+r+Wt+GG+lrnvPvGggr++++ Niben101Scf00180g10005.1 37 PEPLKCPRCSSINTKFCYYNNYNKSQPRHYCKDCKRHWTEGGTLRNVPVGGGRKNKR 93 6789***********************************************977665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.5E-31	39	92	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-21	40	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.795	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MGLSTKLVSF DDHGLDNLSQ NPLPEPPTTR RQPTPKPEPL KCPRCSSINT KFCYYNNYNK 60 SQPRHYCKDC KRHWTEGGTL RNVPVGGGRK NKRLRPTDPV DHIIRMECVT LEANDQRCPL 120 ISTTVPTSTI RGNITTLDEE KKESDIFYET LNFPSTSLPF DHTITNISKK PFNGNYNDIF 180 SGLKLDGNTH FSFCFDTVPC SLITQTSNVC NEYMGKFDNT VEESTVTTVK PITSNSDLLS 240 QPWQIPETSD VTENMSSYWN WNEIDTLNTA DLNIAWDDFE IKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780420.1	0.0	PREDICTED: dof zinc finger protein PBF-like
TrEMBL	A0A1U7X1S1	0.0	A0A1U7X1S1_NICSY; dof zinc finger protein PBF-like
STRING	XP_009780420.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6171	20	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-27	OBF binding protein 4