PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00177g02016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 184aa    MW: 20277.2 Da    PI: 4.9303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00177g02016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15e-193887255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                               y+GVr++  +g+WvAeIr+p   + r +r++lg+f t  eAa+a++ a+++l+g
  Niben101Scf00177g02016.1 38 TYRGVRQRT-WGKWVAEIREP---N-RgARIWLGTFNTSLEAAQAYDDAARRLYG 87
                              69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.19E-283793No hitNo description
Gene3DG3DSA:3.30.730.102.7E-293896IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-203895IPR016177DNA-binding domain
PfamPF008472.1E-133887IPR001471AP2/ERF domain
SMARTSM003806.4E-3438101IPR001471AP2/ERF domain
PROSITE profilePS5103221.2983895IPR001471AP2/ERF domain
PRINTSPR003674.6E-103950IPR001471AP2/ERF domain
PRINTSPR003674.6E-106177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAESVDTNNS LIGKKSTVGR SRKGCMRGKG GPENALCTYR GVRQRTWGKW VAEIREPNRG  60
ARIWLGTFNT SLEAAQAYDD AARRLYGSGA KLNLSETQNS SNENFNSGKK IIIDGDNGNE  120
SSGECSVLEE ASIFKDGNGK YLVWETPAPS LLDGQLSTGF NWNSTNEDDT NFSFEEKEFN  180
EKVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1739100668ATERF1
3gcc_A2e-1739100668ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019239124.11e-104PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A1J6KEL11e-104A0A1J6KEL1_NICAT; Dehydration-responsive element-binding protein 2g
STRINGXP_009630729.18e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.14e-45ERF family protein