PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00176g06015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 27120.7 Da PI: 5.9764 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.00029 | 102 | 133 | 20 | 54 |
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksL 54 f+eL ++l + +++K++K+ iL Av+ + +L Niben101Scf00176g06015.1 102 FQELSSILEPG---KQPKMDKSVILSDAVRIVVQL 133 99********9...9**************977665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.65E-5 | 73 | 138 | No hit | No description |
SuperFamily | SSF47459 | 1.42E-7 | 74 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-11 | 76 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.5.170 | 5.8E-4 | 147 | 180 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAETEEDGSS WLIELGLMED LPSLEPNAQW PSTAFSLPNN LSSGLDDSYG NSDSLKDCGS 60 KKRARSGACA SDSKAHREKM RRDKLNDRHT HTLSLSLSCF LFQELSSILE PGKQPKMDKS 120 VILSDAVRIV VQLRDEAQKL KESYDNLQEK VNELKAEKNE LRDEKQKLKA EKDKLEQQLK 180 TTNAQPGFLP HPPAMASPFS APHQVYASKM MPYLGYPGIP MWQFVPPAAV DTSEDHALRP 240 PVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772342.1 | 1e-164 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 2e-75 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A1U7VX29 | 1e-162 | A0A1U7VX29_NICSY; transcription factor ILR3-like | ||||
STRING | XP_009772342.1 | 1e-163 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA950 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 8e-78 | bHLH family protein |