PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00173g09005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 514aa MW: 56768.7 Da PI: 6.7198 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.5 | 2.4e-11 | 231 | 287 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + rk + g ++ +e+Aa+a++ a++k++g Niben101Scf00173g09005.1 231 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 287 57*******************4444.2344336655.779999**************98 PP | |||||||
2 | AP2 | 49.8 | 8.6e-16 | 330 | 381 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Niben101Scf00173g09005.1 330 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 381 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.07E-15 | 231 | 297 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.83E-20 | 231 | 297 | No hit | No description |
Pfam | PF00847 | 6.0E-9 | 231 | 287 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.649 | 232 | 295 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-22 | 232 | 301 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-13 | 232 | 296 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 233 | 244 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.32E-11 | 330 | 389 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-18 | 330 | 390 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.5E-10 | 330 | 381 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.151 | 331 | 389 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-31 | 331 | 395 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-18 | 331 | 389 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 371 | 391 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010080 | Biological Process | regulation of floral meristem growth | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0035265 | Biological Process | organ growth | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MAPDNNWLSF SLSSMEMLSS SASQSNSMLQ SNMKLAPTFD GSSSADSHHY YFADNFFPHG 60 WSNPKSQVMY TEGEKEALGL NINGNDSSIF QNFLDTQIHQ QTPPKLEDFL GGDSSSLTQD 120 SSSLTHQIYE QQQSNGSTVY HQDFKNLAHG FQYQATAAFS NNSGSEVDNS VGTEFVSESC 180 NDLAYSQCPP ALSTGALSLT VNTTQCLEKE KAIVAVESCK KITDTFGQRT SIYRGVTRHR 240 WTGRYEAHLW DNSCRREGQA RKGRQGGYDK EEKAARAYDL AALKYWGPTA TTNFPVSNYT 300 KELEEMKHMT KQEFIASLRR KSSGFSRGAS IYRGVTRHHQ QGRWQARIGR VAGNKDLYLG 360 TFATEEEAAE AYDIAAIKFR GVNAVTNFEM NRYDVEAIMK SSLPVGGTAK RLKLSLEAEQ 420 KSLSSNNQQQ TTQSSRSNDS SSNINFGAMP PMSAIPCGVP FDATAPFYPH NFFHHLQSAN 480 AGAPDTSGAV TTMASAMPLL PSGAEFFIWP HQSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00504 | DAP | Transfer from AT5G10510 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019253659.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1 | ||||
Swissprot | Q52QU2 | 1e-167 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A1J6IEH4 | 0.0 | A0A1J6IEH4_NICAT; Ap2-like ethylene-responsive transcription factor ail6 | ||||
STRING | XP_009782436.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2580 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 1e-149 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
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