PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00170g02001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 174aa MW: 20319.4 Da PI: 10.3222

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00170g02001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.2	2.4e-17	3	63	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t++ql +L++l++k r+p+ ++ ++++ +l +++ ++V++WFqN +a++++ Niben101Scf00170g02001.1 3 RPRWSPTPQQLMILQDLYRKgLRNPTSSQVQKITGHLslfgKIQCKNVFYWFQNLKARDRQ 63 89***************99***********************************996 PP
2	Wus_type_Homeobox	101.2	7.7e-33	2	64	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+Ptp+Q++iL++ly++Glr+P+++++q+it +L+ +Gki+ kNVfyWFQN kaR+rqk Niben101Scf00170g02001.1 2 PRPRWSPTPQQLMILQDLYRKGLRNPTSSQVQKITGHLSLFGKIQCKNVFYWFQNLKARDRQK 64 579***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.349	1	64	IPR001356	Homeobox domain
SMART	SM00389	1.6E-5	1	68	IPR001356	Homeobox domain
CDD	cd00086	1.86E-4	2	64	No hit	No description
SuperFamily	SSF46689	5.56E-10	3	64	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-7	3	63	IPR009057	Homeodomain-like
Pfam	PF00046	5.9E-15	3	63	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MPRPRWSPTP QQLMILQDLY RKGLRNPTSS QVQKITGHLS LFGKIQCKNV FYWFQNLKAR 60 DRQKLRKQLL HQIEKNPTKD NDNTQLPLFI NNTNSNDVVH FVDNYPSFLP NVHTLYPHSP 120 TILLHQTSSA QMMNNVGKVD LRLTENDMMR TNIQGWVLMM RDNMGQISIP CCSN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016487673.1	1e-112	PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBL	A0A1S4BFQ5	1e-111	A0A1S4BFQ5_TOBAC; WUSCHEL-related homeobox 3-like
STRING	XP_009626933.1	1e-111	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2959	19	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	2e-29	WOX family protein