PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00170g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 226aa    MW: 25935.7 Da    PI: 9.8897
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00170g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.7e-201172157
                              TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              r +R+++t+eql  Lee+++k  r+p+a++++ ++++l    +++ ++V++WFqN++a++++
  Niben101Scf00170g00005.1 11 RPTRWSPTPEQLMFLEEMYRKgVRNPNATQIQNITAHLssygKIEGKNVFYWFQNHKARDRQ 72
                              569*****************99*************************************996 PP
2Wus_type_Homeobox114.65e-371373464
         Wus_type_Homeobox  4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                              tRW+PtpeQ++ Lee+y++G+r+Pn+ +iq+ita+L++yGkie+kNVfyWFQN+kaR+rqk
  Niben101Scf00170g00005.1 13 TRWSPTPEQLMFLEEMYRKGVRNPNATQIQNITAHLSSYGKIEGKNVFYWFQNHKARDRQK 73
                              8***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.608873IPR001356Homeobox domain
SMARTSM003895.0E-61077IPR001356Homeobox domain
SuperFamilySSF466891.28E-111077IPR009057Homeodomain-like
PfamPF000467.0E-181172IPR001356Homeobox domain
CDDcd000864.85E-51173No hitNo description
Gene3DG3DSA:1.10.10.602.6E-71472IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSFLKREKLT RPTRWSPTPE QLMFLEEMYR KGVRNPNATQ IQNITAHLSS YGKIEGKNVF  60
YWFQNHKARD RQKLKKKLLA QMNQQQIFSQ YPVDAHSTTT TSTNTNNLFH CPTDKYSHHS  120
SSVVNQIYPI SSTGLLQEGG IKDASSRVMT YLYPMDISRP IENMENCMIR PYGKDWVLMM  180
NISPNTLPCC INKPLKTLPL FPISETNGLK EQISTTSSTL SLSFSS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618151.11e-147PREDICTED: WUSCHEL-related homeobox 3-like
RefseqXP_016464869.11e-147PREDICTED: WUSCHEL-related homeobox 3-like
SwissprotQ9SIB42e-39WOX3_ARATH; WUSCHEL-related homeobox 3
TrEMBLA0A1S3ZKN41e-146A0A1S3ZKN4_TOBAC; WOX3b
STRINGXP_009618151.11e-146(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-39WOX family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Niu L, et al.
    LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula.
    Plant J., 2015. 81(3): p. 480-92
    [PMID:25492397]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  4. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]