PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00163g22002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 287aa    MW: 32371.2 Da    PI: 6.6797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00163g22002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20137187255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ kl+g
  Niben101Scf00163g22002.1 137 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTALEAAKAYDRAAFKLRG 187
                               8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-32136196IPR001471AP2/ERF domain
CDDcd000186.09E-32136195No hitNo description
SMARTSM003801.5E-37137201IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23137197IPR016177DNA-binding domain
PROSITE profilePS5103224.223137195IPR001471AP2/ERF domain
PfamPF008477.3E-15137187IPR001471AP2/ERF domain
PRINTSPR003671.3E-10138149IPR001471AP2/ERF domain
PRINTSPR003671.3E-10161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MASPQEKCTL DLIRQHLLDD VAFMDYYCSE PTTLYSQSSS SSDSLDQTFS FEPTLDYGNT  60
SQNSSLEISS FFDHSKTECD WFEFETNSKV SAACSNLNSR KQTSFKGRKP SLNIVIPLKQ  120
QEVVQKVGIS SESEKKHYRG VRQRPWGKFA AEIRDPNRKG TRVWLGTFDT ALEAAKAYDR  180
AAFKLRGSKA IVNFPLEVAN FKQEYNNEIP QSANSGRKRV RGTEDEEQLA INKEMKREEE  240
RVHTAAAPLT PTSWSAIWDS GDAKGSFEVP PLSPLSPHMA YSQLVMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-30136198163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215221GRKRVRG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483897.11e-156PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ9LW481e-139ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLA0A1S4B4P11e-155A0A1S4B4P1_TOBAC; ethylene-responsive transcription factor 5-like
STRINGXP_009609460.11e-154(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.15e-62ERF family protein