PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00156g02004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 252aa    MW: 28934.9 Da    PI: 9.1103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00156g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.3e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd+ll ++v+++G g W++++ + g++R++k+c++rw++yl
  Niben101Scf00156g02004.1 14 KGAWTEEEDLLLRRCVEMYGEGKWHKVPIRAGLNRCRKSCRLRWLNYL 61
                              79********************************************97 PP
2Myb_DNA-binding45.12.3e-1469110346
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                ++ +E +l+++++k+lG++ W++Ia +++ gRt++++k++w++
  Niben101Scf00156g02004.1  69 DFSSDEIDLILRLHKLLGNR-WSLIAGRLP-GRTANNVKNYWNT 110
                               699*****************.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-22864IPR009057Homeodomain-like
PROSITE profilePS5129424.71965IPR017930Myb domain
SuperFamilySSF466891.76E-2812108IPR009057Homeodomain-like
SMARTSM007172.2E-151363IPR001005SANT/Myb domain
PfamPF002492.1E-171461IPR001005SANT/Myb domain
CDDcd001673.24E-111661No hitNo description
Gene3DG3DSA:1.10.10.608.4E-2165116IPR009057Homeodomain-like
PROSITE profilePS5129417.50966116IPR017930Myb domain
SMARTSM007177.5E-1266114IPR001005SANT/Myb domain
PfamPF002494.7E-1368111IPR001005SANT/Myb domain
CDDcd001671.38E-870110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MNTTTITKSA GVTKGAWTEE EDLLLRRCVE MYGEGKWHKV PIRAGLNRCR KSCRLRWLNY  60
LRPHIKIGDF SSDEIDLILR LHKLLGNRWS LIAGRLPGRT ANNVKNYWNT QLQRKLIPPQ  120
RQNRKCRVLK ITENTIVRPR PRTFSSSKNF PNFTKTIHND EGSKEINICE KSISDAPTDE  180
GIQWWTSLLD NCNEIEEAAT VGSINLKENN KLLSLLHEEI SPPINGGSNC MQGQSGNWDD  240
LSVDIDLWDR LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-22121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240653.11e-162PREDICTED: transcription factor MYB113-like
RefseqXP_019240654.11e-162PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV99e-60MY113_ARATH; Transcription factor MYB113
TrEMBLA0A1J6JSB41e-160A0A1J6JSB4_NICAT; Transcription factor myb90
STRINGXP_009626596.11e-153(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.16e-62myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]