PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00132g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 665aa    MW: 74423.1 Da    PI: 6.5577
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00132g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772.1e-24129229198
                               EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                               f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv++++L +gD++
  Niben101Scf00132g02003.1 129 FCKVLTASDTSTHGGFSVLRKHANEClppldMNQQTPTQELIAKDLHGTEWHFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDSF 213
                               99****************************9555555679********************************************* PP

                               EEEE-SSSEE..EEEEE- CS
                        B3  81 vFkldgrsefelvvkvfr 98 
                               vF   + +++el+v+v+r
  Niben101Scf00132g02003.1 214 VFL--RGDNGELRVGVRR 229
                               ***..3489999****98 PP
2Auxin_resp99.54.4e-33255334183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               a+ha++t++ F v+Y+Pr+  s+F++ ++k+++++k+ +svGmRfkm+fe+e+s+err++Gt+vg++dl++ +W++S WrsLk
  Niben101Scf00132g02003.1 255 ASHAVTTQTLFVVYYKPRT--SQFIIGLNKYLETVKHGYSVGMRFKMQFEGEESPERRFTGTIVGIEDLSS-QWKDSTWRSLK 334
                               689***************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-41120258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-42122244IPR015300DNA-binding pseudobarrel domain
CDDcd100175.79E-22127229No hitNo description
SMARTSM010195.4E-22129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365129231IPR003340B3 DNA binding domain
PfamPF023622.4E-22129229IPR003340B3 DNA binding domain
PfamPF065073.3E-31255334IPR010525Auxin response factor
PfamPF023091.2E-11552644IPR033389AUX/IAA domain
SuperFamilySSF542771.08E-11555637No hitNo description
PROSITE profilePS5174522.4561642IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MENNGCYQSQ QQTNFSAKGK DDLYQELWKL CAGPLVDVPK VGERVYYFPQ GHMEQLEASM  60
NQELNLRIPS FSLKPKILCR VIHTQLLAEQ DTDEVYAQIT LMPEAAEQAE PTSQDPCPPE  120
PQRPKIHSFC KVLTASDTST HGGFSVLRKH ANECLPPLDM NQQTPTQELI AKDLHGTEWH  180
FKHIFRGQPR RHLLTTGWST FVSSKRLVAG DSFVFLRGDN GELRVGVRRL ARQQSSMPSS  240
VISSQSMHLG VLATASHAVT TQTLFVVYYK PRTSQFIIGL NKYLETVKHG YSVGMRFKMQ  300
FEGEESPERR FTGTIVGIED LSSQWKDSTW RSLKVQWDEP ASVSRPDRVS PWEIEPFMAS  360
VPNPLVPSMA GKNKRHRPHI ETKISEPASS IASAVWNPSI DSPQLNTTGI NSSTLTSHTD  420
SGCGWRLPPL NTSSSMLVDE TEDSKSASAW CGFPSILSSQ FSNGTNQPIL SPTDERKCDT  480
ITTCRLFGID LKSTLIRTTE APLPKPANVS NVSVERASPN TVPAGDSDQN SDLSIDFKDQ  540
KQGQLQLLLK EVQSKQNCST RSRTKVQMQG VAVGRAVDLT ALKGYNELIK ELEEMFEIQG  600
ELHPRNKWEI VFTDDEGDMM LMGDHPWLEF CNVVRRIFIV STQDMKNWSA GNKLLSCADN  660
EAIAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1752135717355Auxin response factor 1
4ldw_A1e-1752135717355Auxin response factor 1
4ldw_B1e-1752135717355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764747.10.0PREDICTED: auxin response factor 9-like isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1U7V9N80.0A0A1U7V9N8_NICSY; Auxin response factor
STRINGXP_009764747.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23472450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9