PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00096g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 293aa    MW: 30661 Da    PI: 9.9655
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00096g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-063659225
                              -S---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                              k ++C  f+ t  C++G++C+F H
  Niben101Scf00096g02003.1 36 KSKPCTKFFSTAGCPFGENCHFLH 59
                              7789******************** PP
2zf-CCCH29.71.1e-0997122227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               kt+lC+ f     Ck+Gd+C+FaHg+
  Niben101Scf00096g02003.1  97 KTKLCNKFNTAEGCKFGDKCNFAHGE 122
                               8***********************96 PP
3zf-CCCH375.8e-12260284126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt+lC +fa+ G C +GdrC+FaHg
  Niben101Scf00096g02003.1 260 FKTKLCENFAK-GSCTFGDRCHFAHG 284
                               69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.773461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.843462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-63561IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-83659IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-43659IPR000571Zinc finger, CCCH-type
PfamPF083520.4979121IPR013563Oligopeptide/dipeptide ABC transporter, C-terminal
SuperFamilySSF902297.2E-894125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-1394125IPR000571Zinc finger, CCCH-type
SMARTSM003560.002195122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0895123IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-797122IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.16E-15160237IPR004088K Homology domain, type 1
SMARTSM003225.2E-12165235IPR004087K Homology domain
PROSITE profilePS5008414.215166230IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.7E-16167235IPR004088K Homology domain, type 1
PfamPF000134.6E-11168232IPR004088K Homology domain, type 1
CDDcd001053.69E-13168230No hitNo description
PfamPF083520.6233283IPR013563Oligopeptide/dipeptide ABC transporter, C-terminal
Gene3DG3DSA:4.10.1000.102.5E-16255290IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-8259285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.596259286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8259289IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9260284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015833Biological Processpeptide transport
GO:0003723Molecular FunctionRNA binding
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDIRKRNRND AGANVNGGVK KYKTEMDSLS SGIGSKSKPC TKFFSTAGCP FGENCHFLHY  60
VPGGYNAVAQ MMKMAPAPSL RNTAALPMSN GNAPAAKTKL CNKFNTAEGC KFGDKCNFAH  120
GEWEIGKPIM PSQEDPRAMG VGPVPGRFGG RIEPAVSGPV ASFGTSATAK ISVDASLAGA  180
IIGKGGVHSK KICRQTGAKL AIRDHETDKN LRNIELEGTF EQISQASAMV RELINSLGSV  240
GGPGRTPAIP GGAAPPGSNF KTKLCENFAK GSCTFGDRCH FAHGAAELRK TGV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767111.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1U7VQ880.0A0A1U7VQ88_NICSY; zinc finger CCCH domain-containing protein 14-like
STRINGXP_009767111.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-88C3H family protein