PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00089g04004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 248aa MW: 27979.2 Da PI: 5.6523

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00089g04004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.2	4.9e-40	27	87	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+a+kcprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknk++ss Niben101Scf00089g04004.1 27 EQAQKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRTSS 87 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	14	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-33	28	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.283	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MSSQTLESML AYTNKAEQEK KPRPGAEQAQ KCPRCDSTNT KFCYYNNYSL TQPRYFCKSC 60 RRYWTKGGTL RNVPVGGGCR KNKRTSSKRS QDLESMTSSP NYPLSSFTPL PCYDSSDLSL 120 AFAKLQEQAS GNLGIEENDM SMMSNNVHYD DFLGAQKSGF LELTPNIFHH NMCYGIDNSG 180 NLGQVENGEI MGLNVSAEME MLYDQEMIFP WQINGEVNNM CDFEASNRQN WNGFDSSFHG 240 LNHSSLIA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018631127.1	1e-167	PREDICTED: dof zinc finger protein DOF2.1-like isoform X2
TrEMBL	A0A314KPH9	1e-162	A0A314KPH9_NICAT; Dof zinc finger protein dof2.1
STRING	XP_009617906.1	1e-161	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	4e-43	TARGET OF MONOPTEROS 6