PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00088g01008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 213aa MW: 23492.3 Da PI: 8.8248 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.5 | 9.2e-33 | 119 | 175 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQy++Il+RRq+Rak+e+ekkl k+rkpylheSRh hAl+R+Rg+gGrF Niben101Scf00088g01008.1 119 DEPVFVNAKQYHGILRRRQSRAKAESEKKL-LKARKPYLHESRHLHALKRARGCGGRF 175 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.2E-35 | 117 | 178 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.593 | 118 | 178 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.4E-27 | 120 | 175 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.3E-23 | 121 | 143 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 123 | 143 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.3E-23 | 152 | 175 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MSTVLVVYGI TYARADGNEN ELPEKQSEAH SESSSPATGM SVPGTVTPNM HYVMPAQHGN 60 ENAMAQTAYP YPDPYYRSIF APYDIQPYPT QPYPAQPMVH VQLMGIQQAG VPLPSDAIDE 120 PVFVNAKQYH GILRRRQSRA KAESEKKLLK ARKPYLHESR HLHALKRARG CGGRFTAKKT 180 DNQPKQDESG GNSQVNINLE SGKNEVASAE NAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-21 | 118 | 190 | 1 | 73 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019227567.1 | 1e-140 | PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2 | ||||
Swissprot | Q84JP1 | 2e-59 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A1S4BG11 | 1e-137 | A0A1S4BG11_TOBAC; nuclear transcription factor Y subunit A-7-like isoform X4 | ||||
TrEMBL | A0A1U7UUH3 | 1e-137 | A0A1U7UUH3_NICSY; nuclear transcription factor Y subunit A-7-like isoform X4 | ||||
STRING | XP_009759697.1 | 1e-125 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6650 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 3e-50 | nuclear factor Y, subunit A7 |
Publications ? help Back to Top | |||
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