PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00085g00008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 196aa MW: 22337.3 Da PI: 8.6423

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00085g00008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.4	1.3e-16	58	108	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr++ +Wv+eIr+p +k+ r++lg+f t+e Aa+a++ a+++l+g Niben101Scf00085g00008.1 58 SFYRGVRRRN-GDKWVCEIREP---NKKSRIWLGTFSTPEIAARAHDVAALALRG 108 67***877.9*****9...347***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	7.85E-21	58	117	IPR016177	DNA-binding domain
SMART	SM00380	9.1E-31	59	122	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.931	59	116	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-7	60	71	IPR001471	AP2/ERF domain
CDD	cd00018	2.11E-30	60	118	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.5E-30	60	118	IPR001471	AP2/ERF domain
Pfam	PF00847	1.1E-10	60	108	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-7	82	98	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MDFEDDQTSN SSCSSSDQDI LDKEKNFNLS PCSTNVIKPL LHNKRRTGRK KFKETRHSFY 60 RGVRRRNGDK WVCEIREPNK KSRIWLGTFS TPEIAARAHD VAALALRGTK ASLNFPESSW 120 SLPKAQSSFP RDIQIAALPI KNTNNDQENS IKGYSDSCEL MEFVDEEAMF NMPILIDSMA 180 EGMLITPPAM KRGFNW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-14	57	116	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:17136305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269\|PubMed:17136305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777029.1	1e-122	PREDICTED: dehydration-responsive element-binding protein 1B-like
Refseq	XP_016488917.1	1e-122	PREDICTED: dehydration-responsive element-binding protein 1B-like
Swissprot	A2WZI4	3e-51	DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
Swissprot	Q8S9Z5	3e-51	DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBL	A0A1S4BJC2	1e-120	A0A1S4BJC2_TOBAC; dehydration-responsive element-binding protein 1B-like
TrEMBL	A0A1U7WQR4	1e-120	A0A1U7WQR4_NICSY; dehydration-responsive element-binding protein 1B-like
STRING	XP_009777029.1	1e-121	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA263	24	183

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25490.1	4e-39	C-repeat/DRE binding factor 1

Publications ? help Back to Top
Wang Q, et al. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Mol. Biol., 2008. 67(6): p. 589-602 [PMID:18470484] Liu HH,Wang YG,Wang SP,Li HJ Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses. Genet. Mol. Res., 2015. 14(1): p. 2331-40 [PMID:25867379]