PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00066g02012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 666aa    MW: 72867.9 Da    PI: 9.5851
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00066g02012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07567616147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Niben101Scf00066g02012.1 567 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 616
                               6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.876562621IPR017930Myb domain
SMARTSM007172.0E-7566619IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-10567617IPR009057Homeodomain-like
SuperFamilySSF466891.2E-15568649IPR009057Homeodomain-like
CDDcd116602.03E-17568618No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MPVKRLDYGF NGYQVPPIPR ATRSARRRGI IRRKADGDGT CPFDLLATVA GKLLGEGESS  60
PDSTGSARGK EQNAIVKDEK IKEKSYAEGC YERGFFISEL VSQAPVVNRS LSELPQAQND  120
TLSGPASVTM SSDCSEKFPF AKQFVNGESR EEEHGVFSSC TLDTESDKQI KIELSNNAKV  180
STSKGAGISS SEFPDVWDKK PSTLLVTSDD SVKLSLSPYP APCRAFPVIR NDVKLDNRDD  240
DENSGCTQPS TPNKASGSAP CVRDRPIKKL LASKYWEENL KSDNEGHANT GGKTMHAYHN  300
RNSAYKHQRS QRDFPFKKRK LFKCGSFSNS DGEMSTDGIC SSPTSDLHGN ASGYSKASSG  360
GGAAAGTSVF NGGRASFKHS DSSVKFRIKS FRVPELFVEI PENATRTVME AVTAILGGGL  420
RIGVVFQGKK VRDDNKTLLQ TGISHDYKLD ALGFSLEPNP IQASPPLGPD CRSCVLPCDT  480
PQRLTRCLSP AITGIQQGRS DDHTGTSLSN FVESGRDSAP SPHYAALEKI SANSRALVPV  540
TAVNAQALAV VPLRKPKRSE ATQRRIRRPF SVAEVEALVQ AVEKLGTGRW RDVKLRAFDN  600
AKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV LTAHAYWSQQ QAKQQMKQPS  660
ETYLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-565546574107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310319QRDFPFKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247591.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_019247592.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLA0A1J6ICI30.0A0A1J6ICI3_NICAT; Telomere repeat-binding protein 5
STRINGXP_009764838.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-118TRF-like 2