PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00063g10005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 363aa    MW: 41896.6 Da    PI: 8.0812
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00063g10005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.92.7e-231154245
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              r e++snrqvt++kRr+gilKKA+E+SvLC++++++++fs+tgk
  Niben101Scf00063g10005.1 11 RLESSSNRQVTYCKRRAGILKKAKEISVLCEIDILLLMFSPTGK 54
                              679****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.31E-20162IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-25261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.605262IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-16424IPR002100Transcription factor, MADS-box
PfamPF003193.3E-181255IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-162439IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-163960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MMGRVRPNMR RLESSSNRQV TYCKRRAGIL KKAKEISVLC EIDILLLMFS PTGKQTLFQG  60
ERSFIEDHCD CTLVEIHGIS FVLLYCLLVT VLYLRQVPKF LASCTGHAKV KLIDALIFKY  120
LELHNQVKVL QSRLTDVEKE TRMECELRDS LNAVHVRKVI YGIFPKAGLI LKYLVWWVLH  180
LNFVEQLQSM MHWNLPMGSR QDEQTLTCHP ANNSQNMPFP VAPNFPTQGG IGYSGDTSVA  240
ECSHVLNTGK ELELERTRQT TAILDDTVWD DLNSIACLRQ QLSEPYSYYP YDDLNLLERK  300
SLDPQSELVP LQLQFWMKNH IRSKGTARVI EQPRCSKTCV FLGLKELFFN WEQGYIYRCS  360
CSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233272.11e-134PREDICTED: agamous-like MADS-box protein AGL30
TrEMBLA0A3Q7FR616e-71A0A3Q7FR61_SOLLC; Uncharacterized protein
STRINGSolyc03g115910.1.15e-71(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.12e-24AGAMOUS-like 65