PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00054g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 236aa MW: 27092.1 Da PI: 5.9418 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.8e-09 | 22 | 55 | 11 | 48 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +l++a +q G W++Ia++++ Rt++++k++w+++l Niben101Scf00054g00013.1 22 KLLEARNQKG---WAAIASYLP-QRTDNDIKNYWNTHL 55 6777777777...*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.506 | 1 | 59 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-13 | 19 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.77E-7 | 21 | 55 | No hit | No description |
Pfam | PF00249 | 6.1E-8 | 22 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.24E-8 | 27 | 61 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDNEEISLVD EVQQKLQAKM DKLLEARNQK GWAAIASYLP QRTDNDIKNY WNTHLKKKLK 60 KFQTGLDHHS HLSSPPADHH SNTCDHFSWN FMSDNNKQGS KLLLQQNHNS PNSSTSLYAS 120 STENISRLLE GWMRSSPNPT TKVDEMILHE NQHNHDDQDL FKSRETSLVQ DEGICNSIKT 180 IPREYKSVFS DCESSGVAEK TMNTNTPPPF TYLEKWLLEE NAAQVEELMG LPMIFT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019227638.1 | 1e-118 | PREDICTED: transcription factor MYB30-like | ||||
TrEMBL | A0A314KPL0 | 1e-116 | A0A314KPL0_NICAT; Transcription factor myb30 | ||||
STRING | XP_009772442.1 | 1e-116 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.2 | 1e-28 | myb domain protein 60 |