PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00052g06003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 592aa    MW: 66068.9 Da    PI: 7.5415
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00052g06003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd++l++ +k++G g+W++ ++  g++R++k+c++rw +yl
  Niben101Scf00052g06003.1 14 KGPWTPEEDQKLINHIKKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                              79********************************************97 PP
2Myb_DNA-binding55.31.5e-1767112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Niben101Scf00052g06003.1  67 RGKFSQEEEQTILNLHAILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                               89********************.*********.************996 PP
3Myb_DNA-binding55.31.5e-17328373148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Niben101Scf00052g06003.1 328 RGKFSQEEEQTILNLHAILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 373
                               89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.675961IPR017930Myb domain
SuperFamilySSF466891.76E-3111108IPR009057Homeodomain-like
SMARTSM007174.7E-161363IPR001005SANT/Myb domain
PfamPF002493.2E-171461IPR001005SANT/Myb domain
CDDcd001679.28E-131661No hitNo description
PROSITE profilePS5129427.18762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2765117IPR009057Homeodomain-like
SMARTSM007175.4E-1766114IPR001005SANT/Myb domain
PfamPF002492.6E-1667112IPR001005SANT/Myb domain
CDDcd001672.44E-1269112No hitNo description
Gene3DG3DSA:1.10.10.601.2E-7301325IPR009057Homeodomain-like
PROSITE profilePS500904.507302322IPR017877Myb-like domain
SuperFamilySSF466891.88E-22307381IPR009057Homeodomain-like
PROSITE profilePS5129427.187323377IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-27326378IPR009057Homeodomain-like
SMARTSM007175.4E-17327375IPR001005SANT/Myb domain
PfamPF002492.6E-16328373IPR001005SANT/Myb domain
CDDcd001672.44E-12330373No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MGRSPCCDES GLKKGPWTPE EDQKLINHIK KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILN LHAILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
YDPMTHRPRT DIFNSLPHLI ALANLKELLV EQHHSSFEGQ AMRLQSEMAT LQYLHYLLQP  180
PQATTPNMEA YNLLNSTKDN GQFIGTNHLE NSLNNIPSIL PSSSLQAIQD SIPFSHLPEL  240
EAAAPCSSFR LTSLNNKENM AQLFVLSQGD QNMTPTPSPW PPASLSPSPR PPGAAATNDI  300
NIAGDSLNRC GKSCRLRWTN YLRPDIKRGK FSQEEEQTIL NLHAILGNKW SAIATHLPGR  360
TDNEIKNFWN THLKKKLIQM GYDPMTHRPR TDIFNSLPHL IALANLKELL VEQHHSSFEG  420
QAMRLQSEMA TLQYLHYLLQ PPQATTPNME AYNLLNSTKD NGQFIGTNHL ENSLNNIPSI  480
LPSSSLQAIQ DSIPFSHLPE LEAAAPCSSF RLTSLNNKEN MAQLFVLSQG DQNMTPTPSP  540
WPPASLSPSP RPPGAAATND INIAGDSNCS TSSFGGAWPE ILLEDSLFHD IP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30123775108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778686.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_016473646.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9S9Z22e-95MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A1S4AAN70.0A0A1S4AAN7_TOBAC; transcription factor MYB39-like
TrEMBLA0A1U7WN210.0A0A1U7WN21_NICSY; transcription factor MYB39-like
STRINGXP_009778686.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.14e-96myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]