PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00046g09010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 269aa    MW: 31138 Da    PI: 6.8366
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00046g09010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.6e-131461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W  eEd +l++ +   G  +W+tI++  g+ R++k+c++rw +yl
  Niben101Scf00046g09010.1 14 RGPWNIEEDHKLLHFILNNGIQCWRTIPKLAGLQRCGKSCRLRWINYL 61
                              89********************************************97 PP
2Myb_DNA-binding52.89e-1767110146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+ ++ E++++++++++lG++ W++Ia++++ gRt++++k++w++
  Niben101Scf00046g09010.1  67 RGALSEAEEDQIIQLHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                               78889*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-20564IPR009057Homeodomain-like
PROSITE profilePS5129414.864961IPR017930Myb domain
SuperFamilySSF466891.2E-2711108IPR009057Homeodomain-like
SMARTSM007173.6E-61363IPR001005SANT/Myb domain
PfamPF002493.9E-111461IPR001005SANT/Myb domain
CDDcd001679.75E-51661No hitNo description
PROSITE profilePS5129426.89262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2565117IPR009057Homeodomain-like
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002492.0E-1567110IPR001005SANT/Myb domain
CDDcd001676.44E-1171110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRQPCCDRV GLKRGPWNIE EDHKLLHFIL NNGIQCWRTI PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAL SEAEEDQIIQ LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKQAG  120
IDPLTHKPID QEKYQQEPDD TIMQLKHHHK TENLSRTETY DKSNEAENCT ENATDFLLSN  180
NACHNMLSEN FDVDLWSKSC KTMSNGYSPT LSLEAEESIK FSTVSAVTES SSNIAPTEEQ  240
DSLQQWMDSI FSCAVNQLEE DLFFLRKYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242757.10.0PREDICTED: myb-related protein 315-like isoform X2
SwissprotP813943e-73MYB15_ANTMA; Myb-related protein 315
SwissprotQ9C7U73e-73MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A1J6INU90.0A0A1J6INU9_NICAT; Myb-related protein pp2
STRINGXP_009763213.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.16e-83myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]